Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1808 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1808 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 21729
| Sequence length: | GenBank #: | |
| Chromosome: | 4,936,894 bp | CP014969 |
| plasmid pSTY1-1808: | 94,014 bp | CP014970 |
REBASE acronym: SenC1808
Org_num: 18904
All begin AW93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21300 | restriction endonuclease | |||
| 21305 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenC1808IIP |
| 21310 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenC1808II |
| 21315 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenC1808II |
| 21320 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2740 | cell division protein DamX | |||
| 2745 | M | M.StyTDamP (100% identity) | GATC | M.SenC1808DamP |
| 2750 | ribulose-phosphate 3-epimerase | |||
| 3240 | 54 aa hypothetical protein | |||
| 3245 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenC1808IV |
| 3250 | Fis family transcriptional regulator | |||
| 6905 | 160 aa hypothetical protein | |||
| 6910 | M | M.Sty13348ORF110P (100% identity) | GATC | M.SenC1808ORF6910P |
| 6915 | crossover junction endodeoxyribonuclease | |||
| 10390 | hydrolase | |||
| 10395 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenC1808DcmP |
| 10400 | V | V.StyUK1DcmP (100% identity) | V.SenC1808DcmP | |
| 10405 | drug/metabolite exporter YedA | |||
| 21470 | DNA repair protein | |||
| 21475 | RM | StyUK1IV (100% identity) | GATCAG | SenC1808III |
| 21480 | 363 aa hypothetical protein | |||
| plasmid pSTY1-1808 | ||||
| 305 | 62 aa hypothetical protein | |||
| 310 | M | M.StyUK1ORFAP (100% identity) | M.SenC1808ORF310P | |
| 315 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18835 | 33 aa hypothetical protein | |||
| 18840 | R | StyUK1IP (99% identity) | CAGAG | SenC1808IP |
| 18845 | M | M.StyUK1I (100% identity) | CAGAG | M.SenC1808I |
| 18850 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21295 | 95 aa hypothetical protein | |||
| 21300 | R | StyUK1MrrP (100% identity) | SenC1808Mrr2P | |
| 21305 | DEAD/DEAH box helicase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10175 | 160 aa hypothetical protein | |||
| 10180 | M | M.StyUK1V (100% identity) | GATC | M.SenC1808ORF10180P |
| 10185 | crossover junction endodeoxyribonuclease | |||