Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1908 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium USDA-ARS-USMARC-1908 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 21729
Complete sequence: 4,799,398 bp
GenBank #: CP014965
REBASE acronym: Sen1908
Org_num: 18897
All begin AX04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19875 | restriction endonuclease | |||
| 19880 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1908IIP |
| 19885 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen1908II |
| 19890 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1908II |
| 19895 | 110 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1970 | cell division protein DamX | |||
| 1975 | M | DNA adenine methylase | GATC | M.Sen1908Dam |
| 1980 | ribulose-phosphate 3-epimerase | |||
| 2465 | DUF2556 domain-containing protein | |||
| 2470 | M | methyltransferase | ATGCAT | M.Sen1908III |
| 2475 | Fis family transcriptional regulator | |||
| 9200 | phosphohydrolase | |||
| 9205 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1908DcmP |
| 9210 | V | V.StyUK1DcmP (100% identity) | V.Sen1908DcmP | |
| 9215 | drug/metabolite exporter YedA | |||
| 20045 | DNA repair protein | |||
| 20050 | RM | StyUK1IV (100% identity) | GATCAG | Sen1908IV |
| 20055 | 363 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5890 | 291 aa hypothetical protein | |||
| 5895 | M | M.SenXSKORFDP (100% identity) | M.Sen1908ORF5895P | |
| 5900 | R | SenXSKORFDP (100% identity) | Sen1908ORF5895P | |
| 5905 | 208 aa hypothetical protein | |||
| 17365 | 33 aa hypothetical protein | |||
| 17370 | R | StyUK1IP (99% identity) | CAGAG | Sen1908IP |
| 17375 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1908I |
| 17380 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19870 | 95 aa hypothetical protein | |||
| 19875 | R | StyUK1MrrP (100% identity) | Sen1908Mrr2P | |
| 19880 | type I restriction-modification system | |||