Desulfobacterium autotrophicum HRM2 |
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Putative Desulfobacterium autotrophicum HRM2 RM systems
Ref: Strittmatter,A.W. et al. Environ. Microbiol. (2009) In press
REBASE ref # 10988
| Sequence length: | GenBank #: | |
| Chromosome: | 5,589,073 bp | CP001087 (NC_012108) |
| plasmid pHRM2a: | 68,709 bp | CP001088 (NC_012109) |
REBASE acronym: DauHRM
Org_num: 5343
All begin HRM2_, HRM2_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1300 | 116 aa hypothetical protein | |||
| ??? | R | HsdR family type I site-specific deoxyribonuclease | DauHRMORF1310P | |
| 1340 | metal-dependent hydrolase | |||
| 14670 | sigma-54 dependent transcriptional regulator | |||
| 14680 | R | DwiPP31ORF56980P (63% identity) | DauHRMORF14690P | |
| 14690 | M | M.Dli5ac10ORF27860P (73% identity) | M.DauHRMORF14690P | |
| 14700 | S | S.DwiPP31ORF56980P (47% identity) | S.DauHRMORF14690P | |
| 14710 | 547 aa conserved hypothetical protein | |||
| 19480 | 53 aa hypothetical protein | |||
| 19490 | M | M.AbuAB28ORFAP (66% identity) | M.DauHRMORF19490P | |
| 19500 | S | S.GspJF8ORF80P (40% identity) | S.DauHRMORF19490P | |
| 19510 | R | SspXG502ORF3250P (51% identity) | DauHRMORF19490P | |
| 19520 | metal-dependent hydrolase family protein | |||
| 49080 | 643 aa conserved hypothetical protein | |||
| 49090 | S | S.Eal3866ORFGP (37% identity) | S.DauHRMORF49100P | |
| 49100 | M | M.LmaLegAORF982P (62% identity) | M.DauHRMORF49100P | |
| 49110 | 136 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20620 | ATP-dependent DNA excision repair protein | |||
| 20630 | RM | MtuSV96ORFIP (67% identity) | DauHRMORF20630P | |
| 20640 | 95 aa hypothetical protein | |||
| 20830 | sigma-54 dependent two component DNA-binding | |||
| 20840 | M | M.SisYNORF2183P (11% identity) | CTAG | M.DauHRMORF20840P |
| 20850 | 106 aa hypothetical protein | |||
| 23390 | CyaA2 | |||
| 23400 | M | M.Dli5ac10ORF4270P (52% identity) | CTAG | M.DauHRMORF23400P |
| 23410 | 228 aa conserved hypothetical protein | |||
| 48980 | 368 aa conserved hypothetical protein | |||
| 48990 | RM | Mva761ORF791P (25% identity) | DauHRMORF48990P | |
| 49000 | transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pHRM2a | ||||
| 400 | 254 aa conserved hypothetical protein | |||
| 410 | M | M.Sba2023ORF1710P (49% identity) | M.DauHRMORF410P | |
| 420 | R | DEAD/DEAH box helicase, Type III | DauHRMORF410P | |
| 430 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3850 | ferric uptake regulation protein | |||
| 3860 | R | VspEJY3McrBP (15% identity) | DauHRMMcrBP | |
| 3870 | UmuD1 | |||
| 39760 | 257 aa conserved hypothetical protein | |||
| 39770 | R | Nar2447ORF4325P (33% identity) | DauHRMORFAP | |
| 39780 | 249 aa hypothetical protein | |||