Desulfuromonas species DDH964 |
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Putative Desulfuromonas species DDH964 RM systems
Ref: Badalamenti,J.P. and Bond,D.R. unpublished
REBASE ref # 21759
Complete sequence: 3,924,652 bp
GenBank #: CP015080
REBASE acronym: Dsp964
Org_num: 18805
All begin DBW_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 305 | zinc metalloprotease | |||
| 306 | R | Pac3247ORF1940P (97% identity) | AAANNNNNNGTCG | Dsp964IIP |
| 307 | S | S.Cbo19482ORF3315P (31% identity) | AAANNNNNNGTCG | S.Dsp964II |
| 308 | M | M.Pac3247ORF1940P (95% identity) | AAANNNNNNGTCG | M.Dsp964II |
| 309 | transcriptional regulator | |||
| 458 | transposase | |||
| ??? | S | restriction modification system DNA specificity domain-containing protein | S1.Dsp964ORF462P | |
| 459 | transposase of ISGsu4 | |||
| 460 | S | S.DspWTLORF1978P (15% identity) | S2.Dsp964ORF462P | |
| 461 | cytochrome C biogenesis protein CycH | |||
| 462 | M | M.Gel16401I (87% identity) | M.Dsp964ORF462P | |
| 463 | 218 aa hypothetical protein | |||
| 3327 | 79 aa hypothetical protein | |||
| 3328 | M | M.FspMY04ORF4086P (67% identity) | M.Dsp964ORF3328P | |
| 3329 | S | S.MspJAM1ORF2154P (35% identity) | S.Dsp964ORF3328P | |
| 3330 | transposase | |||
| 3331 | 60 aa hypothetical protein | |||
| 3332 | endonuclease | |||
| 3333 | nucleotidyltransferase | |||
| 3334 | R | Hfl3223ORF9875P (59% identity) | Dsp964ORF3328P | |
| 3335 | glyoxalase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 111 | D-proline reductase subunit gamma, | |||
| 113 | RM | Dsp964ORF754P (84% identity) | Dsp964ORF113P | |
| 114 | NrdH-like redox domain-containing protein | |||
| 753 | 94 aa hypothetical protein | |||
| 754 | RM | GspSVRORF1180P (68% identity) | Dsp964ORF754P | |
| 756 | TrkA domain-containing protein | |||
| 1158 | 86 aa hypothetical protein | |||
| 1159 | M | M.Bsp436ORF9365P (49% identity) | GTCGAC | M.Dsp964ORF1159P |
| ??? | V | V.SspV179ORF2768P (49% identity) | V.Dsp964ORF1159P | |
| 1160 | histidine kinase | |||
| 2010 | transcriptional regulator | |||
| 2011 | R | GsuRed1IIP (89% identity) | CTCGAG | Dsp964IP |
| 2012 | M | M.GsuRed1II (83% identity) | CTCGAG | M.Dsp964I |
| 2013 | DNA-binding protein | |||
| 2039 | endonuclease | |||
| 2040 | RM | Mcr10ORFFP (82% identity) | Dsp964ORF2040P | |
| 2041 | DNA-binding protein | |||
| 2895 | 120 aa hypothetical protein | |||
| 2896 | M | M.SfuMORF3806P (99% identity) | GGATC | M.Dsp964ORF2896P |
| 2897 | 109 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3088 | transcriptional regulator | |||
| 3089 | R | AfeGT2ORF4360P (74% identity) | Dsp964ORF3091P | |
| 3090 | Chromosome partition protein Smc | |||
| 3091 | M | M.Lin22510ORFBP (52% identity) | M.Dsp964ORF3091P | |
| 3092 | cobalt-sirohydrochlorin C20-methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 338 | site-specific recombinase XerC | |||
| 339 | R | KstMrr3P (41% identity) | Dsp964MrrP | |
| 340 | nuclease | |||