Helicobacter himalayensis YS1 |
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Putative Helicobacter himalayensis YS1 RM systems
Ref: Hu,S. et al. unpublished
REBASE ref # 21756
Complete sequence: 1,829,936 bp
GenBank #: CP014991
REBASE acronym: HhiYS1
Org_num: 18749
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | hypothetical protein | HhiYS1ORFTP | |
| ??? | M | M.Hap1501ORF4375P (77% identity) | M.HhiYS1ORFTP | |
| ??? | DNA methyltransferase | |||
| ??? | M | M.Hsp5293ORF10030P (66% identity) | M.HhiYS1ORFBP | |
| ??? | S | S2.HhiYS1ORFBP (90% identity) | S1.HhiYS1ORFBP | |
| ??? | S | S1.HhiYS1ORFBP (90% identity) | S2.HhiYS1ORFBP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HbiMUIIP (61% identity) | GATC | HhiYS1ORFDP |
| ??? | M | M.Hsp5569ORF8200P (86% identity) | GATC | M.HhiYS1ORFDP |
| ??? | restriction endonuclease | |||
| ??? | DNA methylase | |||
| ??? | RM | HmuST1ORF7035P (59% identity) | HhiYS1ORFEP | |
| ??? | type IIS restriction enzyme | |||
| ??? | R | HhiYS1ORFOP (97% identity) | ACNGT | HhiYS1ORFGP |
| ??? | M | M.HhiYS1ORFOP (98% identity) | ACNGT | M.HhiYS1ORFGP |
| ??? | RM | Hci12219ORF257P (45% identity) | HhiYS1ORFFP | |
| ??? | restriction endonuclease | |||
| ??? | 273 aa hypothetical protein | |||
| ??? | R | Bhy375ORF10060P (53% identity) | ACTGG | HhiYS1ORFKP |
| ??? | M | M1.Hbi43879ORF1182P (61% identity) | ACTGG | M1.HhiYS1ORFKP |
| ??? | M | M.HciP01DORFMP (74% identity) | ACTGG | M2.HhiYS1ORFKP |
| ??? | DNA methyltransferase, partial | |||
| ??? | RM | Cin12927SORF1529P (35% identity) | HhiYS1ORFLP | |
| ??? | DNA methyltransferase | |||
| ??? | M | M3.HhiYS1ORFMP (100% identity) | CCATC | M1.HhiYS1ORFMP |
| ??? | M | M4.HhiYS1ORFMP (83% identity) | CCATC | M2.HhiYS1ORFMP |
| ??? | R | Hsp6451ORF2790P (67% identity) | CCATC | HhiYS1ORFMP |
| ??? | restriction endonuclease | |||
| ??? | restriction endonuclease | |||
| ??? | M | M1.HhiYS1ORFMP (100% identity) | CCATC | M3.HhiYS1ORFMP |
| ??? | M | M2.HhiYS1ORFMP (83% identity) | CCATC | M4.HhiYS1ORFMP |
| ??? | restriction endonuclease | |||
| ??? | hypothetical protein | |||
| ??? | R | HhiYS1ORFOP (100% identity) | ACNGT | HhiYS1ORFNP |
| ??? | M | M.HhiYS1ORFOP (100% identity) | ACNGT | M.HhiYS1ORFNP |
| ??? | DNA methyltransferase | |||
| ??? | restriction endonuclease | |||
| ??? | R | HhiYS1ORFNP (100% identity) | ACNGT | HhiYS1ORFOP |
| ??? | M | M.HhiYS1ORFNP (100% identity) | ACNGT | M.HhiYS1ORFOP |
| ??? | DNA methyltransferase | |||
| ??? | restriction endonuclease | |||
| ??? | M | M3.HhiYS1ORFMP (91% identity) | CCATC | M.HhiYS1ORFPP |
| ??? | 308 aa hypothetical protein | |||
| ??? | DNA methyltransferase | |||
| ??? | M | M.Che9613ORF6915P (67% identity) | GCATC | M.HhiYS1ORFQP |
| ??? | R | Hmu12714IIP (65% identity) | HhiYS1ORFQP | |
| ??? | M | M.HbiMUIV (92% identity) | CCTTC | M.HhiYS1ORFRP |
| ??? | R | HbiMUIVP (78% identity) | CCTTC | HhiYS1ORFRP |
| ??? | M | M.Cup12264ORF1745P (79% identity) | TCNNGA | M.HhiYS1ORFSP |
| ??? | R | Csp25113ORF71P (73% identity) | TCNNGA | HhiYS1ORFSP |
| ??? | hypothetical protein | |||
| ??? | M | M.Hap1501ORF4515P (80% identity) | CCGG | M.HhiYS1ORFUP |
| ??? | restriction endonuclease | |||
| ??? | DNA methyltransferase | |||
| ??? | R | Hma5501ORF1323P (64% identity) | GTAC | HhiYS1ORFVP |
| ??? | M | M.Hsp6451ORF8965P (78% identity) | GTAC | M.HhiYS1ORFVP |
| ??? | restriction endonuclease subunit M | |||
| ??? | 368 aa hypothetical protein | |||
| ??? | M | M.Hsp1616ORF1245P (77% identity) | GGCC | M.HhiYS1ORFWP |
| ??? | R | Hmu12714ORF1118P (77% identity) | GGCC | HhiYS1ORFWP |
| ??? | 257 aa hypothetical protein | |||
| ??? | hypothetical protein | |||
| ??? | R | Ccu8469ORF3715P (66% identity) | GATC | HhiYS1ORFXP |
| ??? | M | M.Hsp1614ORF205P (68% identity) | GATC | M.HhiYS1ORFXP |
| ??? | restriction endonuclease BamHI | |||
| ??? | 296 aa hypothetical protein | |||
| ??? | M | M.HmuST1ORF6095P (84% identity) | M.HhiYS1ORFYP | |
| ??? | DNA methyltransferase | |||
| ??? | restriction endonuclease BamHI | |||
| ??? | M | M.Hsp6451ORF9125P (83% identity) | GTNNAC | M.HhiYS1ORFZP |
| ??? | R | Hsp6451ORF9125P (93% identity) | GTNNAC | HhiYS1ORFZP |
| ??? | modification methylase | |||
| ??? | restriction endonuclease | |||
| ??? | M | M.Hsp5569ORF7315P (71% identity) | CCWGG | M.HhiYS1ORFA1P |
| ??? | 253 aa hypothetical protein | |||
| ??? | RM | HciP01DORFRP (53% identity) | HhiYS1ORFB1P | |
| ??? | DNA methylase | |||
| ??? | M | M.Hca1463ORFPP (76% identity) | GCNGC | M.HhiYS1ORFD1P |
| ??? | R | Hsa16048ORF4245P (43% identity) | GCNGC | HhiYS1ORFD1P |
| ??? | restriction endonuclease subunit M | |||
| ??? | M | M.Hmu12714ORF1700P (84% identity) | AAGCTT | M.HhiYS1ORFC1P |
| ??? | DNA cytosine methyltransferase | |||
| ??? | hypothetical protein | |||
| ??? | M | M.HhiYS1ORFH1P (99% identity) | CATG | M.HhiYS1ORFE1P |
| ??? | 1224 aa hypothetical protein | |||
| ??? | restriction endonuclease subunit M | |||
| ??? | RM | HmuST1ORF4975P (35% identity) | HhiYS1ORFF1P | |
| ??? | 413 aa hypothetical protein | |||
| ??? | R | HmuST1ORF7005P (86% identity) | GAAGA | HhiYS1ORFG1P |
| ??? | M | M2.HmuST1ORF7005P (82% identity) | GAAGA | M1.HhiYS1ORFG1P |
| ??? | M | M1.Hsp1616ORF6705P (87% identity) | GAAGA | M2.HhiYS1ORFG1P |
| ??? | restriction endonuclease subunit M | |||
| ??? | 281 aa hypothetical protein LS67_06705 | |||
| ??? | M | M.HhiYS1ORFE1P (99% identity) | CATG | M.HhiYS1ORFH1P |
| ??? | R | HheORF1050P (76% identity) | CATG | HhiYS1ORFH1P |
| ??? | M | M.Mbo33362ORF2700P (60% identity) | GANTC | M.HhiYS1ORFCP |
| ??? | M | M.Hty1I (58% identity) | GANTC | M.HhiYS1ORFAP |
| ??? | R | Cje6954ORF985P (63% identity) | GANTC | HhiYS1ORFAP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.PspE1aORF10070P (24% identity) | M1.HhiYS1ORFJP | |
| ??? | M | M.Hca1463ORFIP (13% identity) | M2.HhiYS1ORFJP | |
| ??? | hypothetical protein | |||