Salmonella enterica subsp. enterica serovar Typhimurium SL1344RX |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium SL1344RX RM systems
Ref: Fitzgerald,S. et al. Sci Rep 5, 17653 (2015)
REBASE ref # 21519
Complete sequence: 4,882,689 bp
GenBank #: CP011233
REBASE acronym: Sen1344R
Org_num: 18229
All begin WZ82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22910 | endoribonuclease SymE | |||
| 22915 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1344RORF22920P |
| 22920 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen1344RORF22920P |
| 22925 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1344RORF22920P |
| 22930 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9715 | multidrug DMT transporter | |||
| 9720 | V | very short patch repair endonuclease | V.Sen1344RDcmP | |
| 9725 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1344RDcmP |
| 9730 | hydrolase | |||
| 9940 | crossover junction endodeoxyribonuclease | |||
| 9945 | M | M.StyUK1V (100% identity) | GATC | M.Sen1344RORF9945P |
| 9950 | 160 aa hypothetical protein | |||
| 13240 | 217 aa hypothetical protein | |||
| 13245 | M | M.Sens29958ORF6205P (100% identity) | M.Sen1344RORF13245P | |
| 13250 | Ead | |||
| 13830 | endonuclease | |||
| 13835 | M | M.StySopEDamP (100% identity) | GATC | M.Sen1344RORF13835P |
| 13840 | 75 aa hypothetical protein | |||
| 17270 | Fis family transcriptional regulator | |||
| 17275 | M | methyltransferase | ATGCAT | M.Sen1344RORF17275P |
| 17280 | membrane protein | |||
| 17755 | ribulose-phosphate 3-epimerase | |||
| 17760 | M | DNA adenine methylase | GATC | M.Sen1344RDam |
| 17765 | cell division protein DamX | |||
| 22750 | spermidine/putrescine ABC transporter ATPase | |||
| 22755 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | Sen1344RORF22755P |
| 22760 | DNA repair protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1550 | sugar transporter | |||
| 1555 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1344RORF1555P |
| 1560 | R | StyUK1IP (99% identity) | CAGAG | Sen1344RORF1555P |
| 1565 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22925 | DEAD/DEAH box helicase | |||
| 22930 | R | StyUK1MrrP (100% identity) | Sen1344RMrrP | |
| 22935 | membrane protein | |||