Haemophilus parasuis SH0165 |
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Putative Haemophilus parasuis SH0165 RM systems
Ref: Yue,M. et al. J. Bacteriol. 191 (4) (2009) In press
REBASE ref # 10888
Complete sequence: 2,269,156 bp
GenBank #: CP001321 (NC_011852)
REBASE acronym: HpaSH
Org_num: 5281
All begin HAPS_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 347 | ISNme5, family IS110 | |||
| 348 | M | M.Gpa1818ORF5815P (96% identity) | M.HpaSHORF348P | |
| 349 | S | S.Gpa4557ORF1275P (59% identity) | S.HpaSHORF348P | |
| 350 | R | Gpa1808ORF4860P (98% identity) | HpaSHORF348P | |
| 351 | histidinol-phosphate aminotransferase | |||
| 721 | 48 aa hypothetical protein | |||
| 722 | M | M.GpaH80ORF5885P (99% identity) | M.HpaSHORF722P | |
| 723 | S | S.Hpa15995ORF790P (66% identity) | S.HpaSHORF722P | |
| 724 | R | Gpa412ORF6110P (98% identity) | HpaSHORF722P | |
| 725 | apolipoprotein N-acyltransferase | |||
| 1712 | 137 aa hypothetical protein | |||
| 1713 | M | M.Gpa104ORFQP (100% identity) | M.HpaSHORF1713P | |
| 1714 | pseudogene | |||
| ??? | S | S.Hpa33ORF5528P (100% identity) | S1.HpaSHORF1713P | |
| ??? | S | S2.HpaNagORF1802P (98% identity) | S2.HpaSHORF1713P | |
| 1717 | Lj965 prophage protein | |||
| 1718 | possible Lj965 prophage protein | |||
| 1719 | R | Hpa1401ORF6765P (98% identity) | HpaSHORF1713P | |
| 1720 | 101 aa hypothetical protein | |||
| 1949 | pseudogene | |||
| 1950 | S | S.Gpa104ORFMP (86% identity) | S.HpaSHORF1950P | |
| 1951 | Toll-interleukin receptor | |||
| ??? | R | Gpa104ORFMP (100% identity) | HpaSHORF1950P | |
| 1953 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | chromosome partitioning protein MukE, condesin | |||
| 261 | M | M.HpaNagORF227P (96% identity) | CCGG | M.HpaSHORF261P |
| 262 | 199 aa hypothetical protein | |||
| 628 | prophage Lp2 protein 4 | |||
| 629 | M | M.Hpa33ORF6730P (100% identity) | M.HpaSHORF629P | |
| 630 | transcriptional regulator/addiction | |||
| 789 | HemK-like protein/protein-glutamine N-methyl | |||
| 790 | R | HpaSH03ORF2165P (100% identity) | GCGC | HpaSHORF791P |
| 791 | M | M.HpaSH03ORF2165P (92% identity) | GCGC | M.HpaSHORF791P |
| 792 | peptide chain release factor 1 | |||
| 962 | 46 aa hypothetical protein | |||
| 963 | RM | M.Hpa33ORF4306P (100% identity) | HpaSHORF963P | |
| 964 | pseudogene | |||
| 1760 | pseudogene | |||
| 1761 | RM | GpaXP11ORF9570P (100% identity) | HpaSHORF1761P | |
| 1762 | S | S.GpaXP11ORF9570P (99% identity) | S.HpaSHORF1761P | |
| 1763 | pseudogene | |||
| 1916 | ISRssp2, family IS1595 | |||
| 1917 | R | GpaHPS1ORF805P (100% identity) | GACGC | HpaSHORF1918P |
| 1918 | M | M1.GpaHPS1ORF805P (100% identity) | GACGC | M.HpaSHORF1918P |
| 1919 | moodification methylase HgaIA (M.HgaIA) | |||
| 1918 | moodification methylase HgaIA (M.HgaIA) | |||
| 1919 | M | M2.GpaHPS1ORF805P (100% identity) | GACGC | M.HpaSHORF1919P |
| 1920 | transcriptional regulator | |||
| 1953 | metal-dependent hydrolase | |||
| 1954 | M | M.HpaSH03ORF4015P (100% identity) | M.HpaSHORF1954P | |
| 1955 | HNH endonuclease | |||
| 1955 | HNH endonuclease | |||
| 1956 | S | S.Gpa104ORFOP (97% identity) | S.HpaSHORF1955P | |
| 1957 | pseudogene | |||
| 1982 | valyl-tRNA synthetase | |||
| 1983 | M | M.HpaSH03ORF8550P (99% identity) | AAGCTT | M.HpaSHORF1983P |
| 1984 | R | GpaH80ORF11160P (100% identity) | AAGCTT | HpaSHORF1983P |
| 1985 | 56 aa conserved hypothetical protein | |||
| 2117 | D-lactate dehydrogenase | |||
| 2118 | R | HpaST41ORF8905P (100% identity) | CGCG | HpaSHORF2119P |
| 2119 | M | M.HpaST41ORF8905P (100% identity) | CGCG | M.HpaSHORF2119P |
| 2120 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate | |||
| 2280 | predicted Na+-dependent transporters of the SNF | |||
| 2281 | M | M.Hpa906ORF7270P (100% identity) | GATC | M.HpaSHDamP |
| 2282 | 3-dehydroquinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1324 | filamentation induced by cAMP protein Fic | |||
| 1325 | R | HpaNagORF1223P (99% identity) | HpaSHORF1326P | |
| 1326 | M | M2.Hpa33ORFBP (57% identity) | M.HpaSHORF1326P | |
| 1327 | ketol-acid reductoisomerase | |||
| 1825 | LysR family transcriptional regulator | |||
| 1826 | R | Gpa70512ORF10105P (98% identity) | HpaSHORF1827P | |
| 1827 | M | M.Hpa33ORF10578P (100% identity) | M.HpaSHORF1827P | |
| 1828 | ATPase (AAA+ superfamily) | |||
| 2156 | 3-oxoacyl-(acyl carrier protein) synthase I | |||
| 2157 | R | GpaH80ORF225P (99% identity) | HpaSHORF2158P | |
| 2158 | M | M.Gpa104ORFKP (77% identity) | M.HpaSHORF2158P | |
| 2159 | 101 aa hypothetical protein | |||