Salmonella enterica subsp. enterica serovar Typhimurium SO2 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SO2 RM systems
Ref: Silva,C. et al. unpublished
REBASE ref # 21889
| Sequence length: | GenBank #: | |
| Chromosome: | 4,916,170 bp | CP014356 |
| plasmid pSO2_STV: | 93,837 bp | CP014357 |
REBASE acronym: SenSO2
Org_num: 18321
All begin SE17cs_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4819 | endoribonuclease SymE | |||
| 4821 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSO2ORF4822P |
| 4822 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSO2ORF4822P |
| 4823 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSO2ORF4822P |
| 4824 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2078 | inner membrane transporter yedA | |||
| 2079 | V | V.StyUK1DcmP (100% identity) | V.SenSO2DcmP | |
| 2080 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSO2DcmP |
| 2081 | hydrolase | |||
| 2126 | Crossover junction endodeoxyribonuclease RusA | |||
| 2127 | M | M.StyUK1V (100% identity) | GATC | M.SenSO2ORF2127P |
| 2128 | phage protein | |||
| 2911 | endonuclease | |||
| 2912 | M | M.SspA39ORFGP (100% identity) | GATC | M.SenSO2ORF2912P |
| 2913 | RNA polymerase-binding protein DksA | |||
| 3604 | DNA-binding protein Fis | |||
| 3605 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSO2ORF3605P |
| 3606 | membrane protein | |||
| 3709 | ribulose-phosphate 3-epimerase | |||
| 3710 | M | M.StyTDamP (100% identity) | GATC | M.SenSO2DamP |
| 3711 | DamX protein | |||
| 4786 | spermidine/putrescine ABC transporter ATPase | |||
| 4787 | RM | StyUK1IV (100% identity) | GATCAG | SenSO2ORF4787P |
| 4788 | DNA repair ATPase | |||
| plasmid pSO2_STV | ||||
| 4961 | cytoplasmic protein | |||
| 4962 | M | M.StyUK1ORFAP (100% identity) | M.SenSO2ORF4962P | |
| 4963 | yfcA protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 440 | sialic acid transporter | |||
| 441 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSO2ORF441P |
| 442 | R | SenSO3ORF435P (100% identity) | CAGAG | SenSO2ORF441P |
| 443 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4823 | subunit R of type I restriction-modification | |||
| 4824 | R | StyUK1MrrP (100% identity) | SenSO2Mrr2P | |
| 4825 | 95 aa hypothetical protein | |||