Acidithiobacillus ferrooxidans ATCC 23270 |
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Putative Acidithiobacillus ferrooxidans ATCC 23270 RM systems
Ref: Valdes,J. et al. unpublished
REBASE ref # 10859
Complete sequence: 2,982,397 bp
GenBank #: CP001219 (NC_011761)
REBASE acronym: AfeA
Org_num: 5262
All begin AFE_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 682 | 35 aa hypothetical protein | |||
| 683 | R | AfeYQN3ORF3730P (100% identity) | AfeAORF684P | |
| 684 | M | M.AfeYQN3ORF3730P (100% identity) | M.AfeAORF684P | |
| 685 | death-on-curing family protein | |||
| 686 | S | S.Asp221ORFSP (62% identity) | S.AfeAORF684BP | |
| 687 | 519 aa hypothetical protein | |||
| 825 | 49 aa hypothetical protein | |||
| 826 | M | M.AfeYQN3ORF4390P (100% identity) | M.AfeAORF826P | |
| 827 | ATP-dependent DNA helicase, putative | |||
| 828 | 355 aa conserved hypothetical protein | |||
| 829 | S | S.Afe4253ORFDP (90% identity) | S.AfeAORF826P | |
| 831 | 182 aa hypothetical protein | |||
| 840 | 937 aa hypothetical protein | |||
| 841 | R | AfeYQN3ORF4390P (100% identity) | AfeAORF841P | |
| 842 | 111 aa conserved hypothetical protein | |||
| 1384 | 113 aa conserved hypothetical protein | |||
| ??? | M | M.AfeAORF1385P (78% identity) | M.AfeAORF1P | |
| 1386 | 74 aa hypothetical protein | |||
| 1384 | 113 aa conserved hypothetical protein | |||
| 1385 | M | M.AspAMDII (94% identity) | M.AfeAORF1385P | |
| 1386 | 74 aa hypothetical protein | |||
| 1574 | 327 aa hypothetical protein | |||
| 1575 | R | Afe18981ORF23950P (97% identity) | AfeAORF1577P | |
| 1576 | S | S.Asp221ORFVP (87% identity) | S.AfeAORF1577P | |
| 1577 | M | M.AspAMDORF1015P (99% identity) | M.AfeAORF1577P | |
| 1578 | PIN domain protein | |||
| 2371 | 79 aa hypothetical protein | |||
| 2372 | M | M.AfeYQN3ORF10580P (100% identity) | M.AfeAORF2372P | |
| 2373 | 67 aa hypothetical protein | |||
| 2374 | anticodon nuclease, putative | |||
| 2376 | 53 aa hypothetical protein | |||
| 2375 | ATP-dependent helicase, DEAD/DEAH box family | |||
| 2377 | 262 aa hypothetical protein | |||
| ??? | S | S.AfeYQN3ORF10580P (100% identity) | S.AfeAORF2372P | |
| 2379 | 65 aa hypothetical protein | |||
| 2380 | conserved domain protein | |||
| 2381 | R | AfeYQN3ORF10580P (100% identity) | AfeAORF2372P | |
| 2382 | 45 aa hypothetical protein | |||
| 2789 | 260 aa hypothetical protein | |||
| 2790 | R | AfeBYMORF13885P (100% identity) | AfeAORF2793P | |
| 2791 | S | S.AfeBYMORF13885P (100% identity) | S.AfeAORF2793P | |
| 2792 | 73 aa conserved hypothetical protein | |||
| 2793 | M | M.AfeBYMORF13885P (100% identity) | M.AfeAORF2793P | |
| 2794 | 140 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1220 | 261 aa hypothetical protein | |||
| 1221 | M | modification methylase, putative | M.AfeAORF1221P | |
| 1222 | 237 aa hypothetical protein | |||
| 1567 | 398 aa hypothetical protein | |||
| 1568 | M | M.Asp221ORFPP (100% identity) | TGGCCA | M.AfeAORF1568P |
| 1569 | single-strand binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3190 | 43 aa hypothetical protein | |||
| 3191 | R | AfeYQN3ORF14745P (88% identity) | AfeAORF3192P | |
| 3192 | M | M.AfeYQN3ORF14745P (100% identity) | M.AfeAORF3192P | |
| 3193 | PHP domain protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2768 | transposase, degenerate | |||
| 2769 | R | Afe4253MrrP (99% identity) | AfeAMrr2P | |
| 2770 | pseudogene | |||
| 3185 | ISPsy2, transposase | |||
| 3186 | R | AfeBYMMrrP (100% identity) | AfeAMrrP | |
| 3187 | transposase. degenerate | |||