Escherichia coli UCD-JA09 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli UCD-JA09 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,188,428 bp
GenBank #: LJXW00000000 (NZ_LJXW00000000)
REBASE acronym: EcoJA9
Org_num: 18043
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 425 | 550 aa hypothetical protein | |||
| 426 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | EcoJA9ORFAP |
| 429 | M | M.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | M.EcoJA9ORFAP |
| 432 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.EcoJA9ORFAP |
| 435 | 113 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 31 | 115 aa conserved hypothetical protein | |||
| 34 | M | M.EcoleORFAP (100% identity) | GATC | M.EcoJA9ORFEP |
| 37 | recombination protein ninB from phage origin | |||
| 24 | membrane protein | |||
| 25 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoJA9ORFBP |
| 28 | DNA-binding protein fis | |||
| 92 | 216 aa Hypothetical protein yedJ | |||
| 94 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoJA9DcmP |
| ??? | V | V.EcosC25DcmP (100% identity) | CCWGG | V.EcoJA9DcmP |
| 100 | multidrug DMT transporter | |||
| 415 | cell division protein DamX | |||
| 418 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA9DamP |
| 420 | ribulose-phosphate 3-epimerase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22 | 124 aa Hypothetical protein c5374 | |||
| 23 | M | M.EcoUTI89I (100% identity) | CACAG | M.EcoJA9ORFDP |
| 26 | R | EcoUTI89IP (100% identity) | CACAG | EcoJA9ORFDP |
| 29 | integrase | |||