Escherichia coli UCD-JA33 |
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Putative Escherichia coli UCD-JA33 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,461,720 bp
GenBank #: LJYB00000000 (NZ_LJYB00000000)
REBASE acronym: EcoJA33
Org_num: 18048
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 100 | endoribonuclease SymE | |||
| 104 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoJA33ORFDP |
| 107 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoJA33ORFDP |
| 110 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoJA33ORFDP |
| 111 | 369 aa hypothetical protein | |||
| 719 | 63 aa hypothetical protein | |||
| 720 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoJA33ORFAP |
| 727 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoJA33ORFAP |
| 731 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoJA33ORFAP |
| 732 | 217 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M2.EcosS9ORF2810P (96% identity) | GGTCTC | M1.EcoJA33ORFLP |
| 2 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoJA33ORFLP |
| 3 | 83 aa hypothetical protein G945_04437 | |||
| 1 | M | DNA methylase, partial | M.EcoJA33ORFOP | |
| 5 | 73 aa hypothetical protein | |||
| 1 | 75 aa hypothetical protein | |||
| 2 | M | modification methylase | GTCGAC | M.EcoJA33ORFPP |
| 2 | Uncharacterised protein | |||
| 5 | M | M.SflC32ORFDP (100% identity) | M.EcoJA33ORFMP | |
| 10 | 73 aa hypothetical protein | |||
| 4 | 171 aa hypothetical protein | |||
| 5 | M | M.Mxa6833447ORFBP (100% identity) | M.EcoJA33ORFKP | |
| 6 | 81 aa hypothetical protein ECP_4573 | |||
| 5 | 103 aa hypothetical protein, partial | |||
| 7 | M | M.KpnVA569ORF28145P (67% identity) | M.EcoJA33ORFNP | |
| 8 | 257 aa hypothetical protein | |||
| 9 | M | M.Sfl426ORFAP (100% identity) | CCWGG | M.EcoJA33ORFJP |
| 12 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoJA33ORFJP |
| 13 | 59 aa hypothetical protein | |||
| 12 | 86 aa hypothetical protein | |||
| 13 | M | M.EcosS9ORF10680P (81% identity) | M.EcoJA33ORFEP | |
| 15 | ARAC-type regulatory protein, partial | |||
| 12 | restriction endonuclease | |||
| 13 | R | Eco13881ORF16050P (97% identity) | GGTCTC | EcoJA33ORFLP |
| 21 | 231 aa hypothetical protein EC958_2227 | |||
| 23 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoJA33DcmP |
| ??? | V | V.SflC32DcmP (74% identity) | V.EcoJA33DcmP | |
| 29 | multidrug DMT transporter | |||
| 109 | ribulose-phosphate 3-epimerase | |||
| 110 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA33DamP |
| 112 | cell division protein DamX | |||
| 256 | antitermination protein | |||
| ??? | M | M2.EcosS3ORF2905P (94% identity) | GTCGAC | M.EcoJA33ORFIP |
| 288 | Uncharacterised protein | |||
| 290 | M | M.EspP049ORF3912P (100% identity) | M.EcoJA33ORFCP | |
| 293 | 166 aa hypothetical protein | |||
| 392 | DNA-binding protein fis | |||
| 394 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoJA33ORFFP |
| 396 | membrane protein | |||
| 496 | phage protein, partial | |||
| 501 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoJA33ORFGP |
| 505 | LexA family transcriptional regulator | |||
| 521 | 82 aa hypothetical protein | |||
| 522 | M | M.EcosR6ORF7985P (100% identity) | M.EcoJA33ORFHP | |
| 524 | holin, partial | |||
| 620 | transcriptional regulator | |||
| 621 | M | M.KpnYN1ORFGP (99% identity) | M.EcoJA33ORFBP | |
| 623 | 71 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11 | restriction endonuclease | |||
| 12 | R | EcosS9McrCP (100% identity) | EcoJA33McrCP | |
| 13 | restriction endonuclease | |||