Escherichia coli UCD-JA19 |
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Putative Escherichia coli UCD-JA19 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,200,451 bp
GenBank #: LJXZ00000000 (NZ_LJXZ00000000)
REBASE acronym: EcoJA19
Org_num: 18046
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S1.EcoNGF1ORF15560P (100% identity) | S.EcoJA19ORFEP | |
| 3 | R | EcosA33IP (100% identity) | EcoJA19ORFEP | |
| 5 | 68 aa conserved hypothetical protein | |||
| 21 | restriction methylase | |||
| 24 | M | M.EcosA4I (100% identity) | M.EcoJA19ORFGP | |
| 27 | S | S1.EcoSCU484ORF20710P (100% identity) | S.EcoJA19ORFGP | |
| 93 | endoribonuclease SymE | |||
| 97 | R | EcosA4IIP (100% identity) | EcoJA19ORFCP | |
| 101 | S | S.EcosA4II (100% identity) | S.EcoJA19ORFCP | |
| 102 | M | M.EcosA4II (100% identity) | M.EcoJA19ORFCP | |
| 104 | 369 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | 62 aa unknown | |||
| 8 | M | M.UbapDS2ORFAP (100% identity) | CCWGG | M.EcoJA19ORFHP |
| 9 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoJA19ORFHP |
| 11 | transposase | |||
| 205 | 73 aa hypothetical protein | |||
| 208 | M | M.Ecowhn14ORF35P (100% identity) | M.EcoJA19ORFFP | |
| 213 | 103 aa hypothetical protein, partial | |||
| 235 | 70 aa hypothetical protein | |||
| 236 | M | M.EcoMES1ORFAP (100% identity) | GATC | M.EcoJA19ORFAP |
| 237 | endonuclease | |||
| 169 | hydrolase | |||
| 171 | M | M.EcosA33DcmP (100% identity) | CCWGG | M.EcoJA19DcmP |
| ??? | V | V.EcosA4DcmP (100% identity) | V.EcoJA19DcmP | |
| 177 | multidrug DMT transporter | |||
| 412 | cell division protein DamX | |||
| 415 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA19DamP |
| 417 | ribulose-phosphate 3-epimerase | |||
| 1070 | DNA-binding protein fis | |||
| 1072 | M | M.PmeBin470ORFAP (99% identity) | ATGCAT | M.EcoJA19ORFBP |
| 1074 | membrane protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16 | restriction endonuclease | |||
| 18 | R | EcosA4McrCP (100% identity) | EcoJA19McrCP | |
| 19 | R | EcosA4McrBP (100% identity) | EcoJA19McrBP | |
| 20 | 59 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 412 | cell division protein DamX | |||
| 415 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA19ORFDP |
| 417 | ribulose-phosphate 3-epimerase | |||