Aliivibrio salmonicida LFI1238 |
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Putative Aliivibrio salmonicida LFI1238 RM systems
Ref: Hjerde,E. et al. unpublished
REBASE ref # 10783
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,325,165 bp | FM178379 (NC_011312) |
| chromosome 2: | 1,206,461 bp | FM178380 (NC_011313) |
REBASE acronym: AsaLF
Org_num: 5167
All begin VSAL_I, VSAL_II
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1789 | 238 aa conserved hypothetical protein | |||
| 1790 | R | Asa1238ORF10665P (99% identity) | AsaLFORF1792P | |
| 1791 | S | S.Asa1238ORF10665P (100% identity) | S.AsaLFORF1792P | |
| 1792 | M | M.Asa1238ORF10665P (100% identity) | M.AsaLFORF1792P | |
| 1793 | exported protein | |||
| 2482 | ABC transporter, ATP-binding domain | |||
| 2483 | R | VspED004ORF8075P (54% identity) | AsaLFORF2483P | |
| 2487 | transposase (pseudogene) | |||
| 2482 | ABC transporter, ATP-binding domain | |||
| ??? | R | AsaLFORF2483P (46% identity) | AsaLFORFAP | |
| 2484 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2724 | cell division protein | |||
| 2725 | M | M.Asa1238DamP (100% identity) | GATC | M.AsaLFDamP |
| 2726 | ribulose-phosphate 3-epimerase | |||
| chromosome 2 | ||||
| 411 | 637 aa hypothetical protein | |||
| 412 | M | M.Asa1238ORF19555P (100% identity) | M.AsaLFORF412P | |
| 413 | membrane protein | |||
| 502 | bacteriophage integrase (fragment) | |||
| 503 | M | M.Asa1238ORF20035P (100% identity) | M.AsaLFORF503P | |
| 504 | signal transduction protein, histidine kinase | |||