Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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Putative Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RM systems
Ref: Ravel,J. et al. unpublished
REBASE ref # 10690
Complete sequence: 4,842,908 bp
GenBank #: CP001144 (NC_011205)
REBASE acronym: SenDC
Org_num: 5152
All begin SeD_A
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4928 | transporter | |||
| 4929 | R | Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | SenDCORF4931P |
| ??? | S | S.SenHWS51ORF5168P (100% identity) | GGYANNNNNNTCG | S.SenDCORF4931P |
| ??? | type I restriction-modification system specificity subunit M | |||
| 4931 | M | M.StySBLI (100% identity) | GGYANNNNNNTCG | M.SenDCORF4931P |
| ??? | 354 aa hypothetical protein L390_03736 | |||
| ??? | type I restriction-modification system specificity subunit M | |||
| ??? | S | S1.Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | S.SenDCORFAP |
| 4931 | type I restriction-modification system, M | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1086 | 174 aa conserved hypothetical bacteriophage protein | |||
| 1087 | M | M.Ssp3CORF17125P (100% identity) | M.SenDCORF1087P | |
| 1088 | Eaa1 | |||
| 1248 | metal dependent phosphohydrolase | |||
| 1249 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.SenDCORF1249P |
| 1250 | V | V.StyUK1DcmP (100% identity) | V.SenDCORF1249P | |
| 1251 | carboxylate/amino acid/amine transporter | |||
| 2281 | holiday-junction resolvase | |||
| 2282 | M | M.Ssp3CORF22825P (100% identity) | GATC | M.SenDCORF2282P |
| 2283 | Sb43 | |||
| 2296 | 245 aa conserved hypothetical protein | |||
| 2297 | M | M.SenHWS51ORF14380P (100% identity) | M.SenDCORF2297P | |
| 2298 | Eaa1 | |||
| 3057 | bacteriophage replication gene A | |||
| 3058 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.SenDCORF3058P |
| 3059 | C4-type zinc finger protein, DksA/TraR family | |||
| 3746 | DNA-binding protein Fis | |||
| 3747 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenDCORF3747P |
| 3748 | periplasmic protein | |||
| 3851 | ribulose-phosphate 3-epimerase | |||
| 3852 | M | M.StyTDamP (100% identity) | GATC | M.SenDCDamP |
| 3853 | protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 388 | major facilitator superfamily MFS_1 | |||
| 389 | M | M.StyUK1I (100% identity) | CAGAG | M.SenDCORF389P |
| 390 | R | Ssp3CORF13760P (99% identity) | CAGAG | SenDCORF389P |
| 391 | cytochrome bd-II oxidase subunit 1 | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4931 | type I restriction-modification system, M | |||
| ??? | R | Sen59898MrrP (100% identity) | SenDCMrrP | |
| 4935 | 44 aa hypothetical protein | |||