Lactobacillus fermentum HFB3 |
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Putative Lactobacillus fermentum HFB3 RM systems
Ref: Kumari,M. et al. Genome Announc 3 (6), e01296-15 (2015)
REBASE ref # 20990
Contig set: 2,043,356 bp
GenBank #: LJFJ00000000 (NZ_LJFJ00000000)
REBASE acronym: LfeHFB3
Org_num: 17605
All begin AN630_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7380 | transcriptional regulator | |||
| 7385 | M | M.LjoN31ORF8890P (98% identity) | M.LfeHFB3ORF7385P | |
| 7390 | S | S3.Lsa210215ORF5130P (52% identity) | S.LfeHFB3ORF7385P | |
| 7395 | R | LfeLF2ORF7840P (95% identity) | LfeHFB3ORF7385P | |
| 7400 | 250 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6250 | pseudogene | |||
| 6255 | RM | Lfe2760ORF9925P (95% identity) | LfeHFB3ORF6255P | |
| 6260 | 188 aa hypothetical protein | |||
| 6565 | transcriptional regulator | |||
| 6570 | R | Lfe3290ORF8760P (99% identity) | GCWGC | LfeHFB3ORF6575P |
| 6575 | M | M.LfeL14ORF9430P (100% identity) | GCWGC | M.LfeHFB3ORF6575P |
| 6580 | transposase | |||
| 3185 | 657 aa hypothetical protein | |||
| 3190 | RM | LfeM4ORF8830P (20% identity) | LfeHFB3ORF3190CP | |
| 3195 | RM | Lfe6620ORF6570P (55% identity) | LfeHFB3ORF3190BP | |
| 3200 | transposase | |||
| 3205 | 177 aa hypothetical protein | |||
| 3210 | RM | M.LjoDC222ORF7355P (77% identity) | LfeHFB3ORF3190AP | |
| 3215 | methylase | |||
| 3210 | pseudogene | |||
| 3215 | M | M2.Lfe6620ORF6570P (92% identity) | M.LfeHFB3ORF3215P | |
| 3220 | 630 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6630 | pseudogene | |||
| 6635 | R | LfeL14ORF9415P (98% identity) | LfeHFB3ORF6635P | |
| 6640 | nucleotide pyrophosphohydrolase | |||