Syntrophaceticus schinkii Sp3 |
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Putative Syntrophaceticus schinkii Sp3 RM systems
Ref: Manzoor,Shahid. and Zubair,Saima unpublished
REBASE ref # 20896
Contig set: 3,166,921 bp
GenBank #: CDRZ00000000 (NZ_CDRZ00000000)
REBASE acronym: SscSp3
Org_num: 17474
All begin SSCH_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 40002 | 630 aa conserved hypothetical protein | |||
| ??? | M | M.SwoGORF2258P (78% identity) | M.SscSp3ORF40003P | |
| 40005 | S | S.RbaRAORF6575P (38% identity) | S.SscSp3ORF40003P | |
| 40006 | R | SspADCORF17890P (80% identity) | SscSp3ORF40003P | |
| 40007 | Zinc metalloprotease | |||
| 1510002 | Transcriptional regulator, XRE family | |||
| 1510003 | M | M.Cco2909ORF924P (82% identity) | M.SscSp3ORF1510003P | |
| ??? | S | S.AmuNB28ORFBP (44% identity) | S.SscSp3ORF1510003P | |
| 1510007 | R | DcaSRBORF2301P (80% identity) | SscSp3ORF1510003P | |
| 1510008 | Peptidase M23 | |||
| 390006 | conserved membrane hypothetical protein | |||
| ??? | R | PsiB73ORF3815P (65% identity) | SscSp3ORF390010P | |
| ??? | M | M.TstRKWS1ORF1839P (56% identity) | M.SscSp3ORF390010P | |
| 390012 | S | S.MarArch1ORF50P (42% identity) | S1.SscSp3ORF390010P | |
| 390013 | S | S.Pae37ORF6067P (26% identity) | S2.SscSp3ORF390010P | |
| 390014 | membrane hypothetical protein | |||
| 430013 | 77 aa conserved hypothetical protein | |||
| 430014 | R | Lsa4014ORF5405P (68% identity) | SscSp3ORF430019P | |
| 430015 | S | 164 aa hypothetical protein | S1.SscSp3ORF430019P | |
| 430016 | S | S.ShaNSP93ORFDP (35% identity) | S2.SscSp3ORF430019P | |
| 430017 | Nucleotidyltransferase domain protein | |||
| 430018 | 132 aa conserved hypothetical protein | |||
| 430019 | M | M.Sto61278ORF10285P (66% identity) | M.SscSp3ORF430019P | |
| 430020 | HIRAN domain protein | |||
| 520014 | 52 aa conserved hypothetical protein | |||
| ??? | M | M.CbaLB2ORF14640P (74% identity) | M.SscSp3ORF520015P | |
| 520017 | S | S.CgaBS1II (19% identity) | S1.SscSp3ORF520015P | |
| 520018 | S | S.DhyAM13ORF20026P (17% identity) | S2.SscSp3ORF520015P | |
| 520019 | S | Type I restriction-modification system S subunit | S3.SscSp3ORF520015P | |
| 520020 | R | CbaLB2ORF14640P (78% identity) | SscSp3ORF520015P | |
| 520021 | 274 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1930001 | SNF2-related protein (fragment) | |||
| 1930002 | M | M.Rpa2782ORF8125P (63% identity) | M.SscSp3ORF1930002P | |
| 1930003 | 296 aa conserved hypothetical protein | |||
| 720003 | 95 aa hypothetical protein | |||
| ??? | M | M.Tph12270I (56% identity) | GGNCC | M.SscSp3ORF720004P |
| 720006 | ADP-ribosylglycohydrolase | |||
| 720008 | Trypsin-like serine protease | |||
| 720009 | M | M.Tph12270II (72% identity) | CGCG | M.SscSp3ORF720009P |
| 720011 | 243 aa conserved hypothetical protein | |||
| 920011 | 76 aa hypothetical protein | |||
| 920012 | M | M.CthORF2470P (71% identity) | GATC | M.SscSp3ORF920012P |
| 920013 | transposase | |||
| 110014 | 164 aa conserved hypothetical protein | |||
| 110015 | M | M.PbaPla110ORF32610P (38% identity) | CCSGG | M.SscSp3ORF110015P |
| 110016 | 260 aa conserved hypothetical protein | |||
| 420035 | 385 aa hypothetical protein | |||
| ??? | M | M.Cda8977ORF861P (55% identity) | M1.SscSp3ORF420036P | |
| 420037 | M | M1.SscSp3ORF420036P (25% identity) | M2.SscSp3ORF420036P | |
| 420039 | 819 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1070011 | Anaerobic ribonucleoside-triphosphate | |||
| 1070012 | M | M.Tph12270III (47% identity) | M.SscSp3ORF1070012P | |
| 1070013 | Anaerobic ribonucleoside-triphosphate reductase | |||
| 30009 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | |||
| ??? | M | M.UbaMSORFF23P (23% identity) | CGCC | M.SscSp3ORF30010P |
| 30012 | 113 aa hypothetical protein | |||
| 440027 | 168 aa hypothetical protein | |||
| 440028 | M | M.NspDNFORF212P (51% identity) | M.SscSp3ORF440028P | |
| 440029 | 349 aa conserved hypothetical protein | |||
| 440030 | R | GliD10ORF1970P (64% identity) | SscSp3ORF440028P | |
| 440032 | Glycoside hydrolase family 18 | |||