Helicobacter pylori 7C |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori 7C RM systems
Ref: Mucito-Varela,E. et al. unpublished
REBASE ref # 21365
Complete sequence: 1,624,441 bp
GenBank #: CP012905
REBASE acronym: Hpy7C
Org_num: 17402
All begin APV63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2185 | polyphosphate kinase | |||
| 2195 | S | S.HpyNCI25ORFE1P (98% identity) | S.Hpy7CORF2200P | |
| 2200 | M | M.HpyCOL119IV (95% identity) | M.Hpy7CORF2200P | |
| 2205 | R | HpyTW08XIVP (91% identity) | Hpy7CORF2200P | |
| 2210 | 631 aa hypothetical protein | |||
| 2455 | 228 aa hypothetical protein | |||
| 2460 | M | M.HpyF011XII (93% identity) | M.Hpy7CORF2460P | |
| 2465 | S | S.HpyCR9ORFAP (70% identity) | S.Hpy7CORF2460P | |
| 2470 | R | HpySP209XVP (95% identity) | Hpy7CORF2460P | |
| 2475 | hydroxyethylthiazole kinase | |||
| 2750 | cadmium transporter | |||
| 2755 | S | S.HpySP209ORF3235P (97% identity) | S.Hpy7CORF2755P | |
| 2760 | 499 aa hypothetical protein | |||
| 6840 | 85 aa hypothetical protein | |||
| 6845 | S | S.HpyAL1ORF2910P (97% identity) | S.Hpy7CORF6845P | |
| 6850 | formyltetrahydrofolate deformylase | |||
| 7370 | FAD-dependent thymidylate synthase | |||
| 7375 | S | S.HpyBR20XI (97% identity) | S.Hpy7CORF7380P | |
| 7380 | M | M.HpySP204X (96% identity) | M.Hpy7CORF7380P | |
| 7385 | R | Hpy173ORF3275P (94% identity) | Hpy7CORF7380P | |
| 7390 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyP108V (99% identity) | CCTC | M1.Hpy7CORF245P |
| 250 | M | M2.HpyP004ORF255P (98% identity) | CCTC | M2.Hpy7CORF245P |
| 255 | proline:sodium symporter PutP | |||
| 450 | 326 aa hypothetical protein | |||
| 455 | M | M.HpyJO6X (97% identity) | GATC | M.Hpy7CORF455P |
| 460 | alpha-1,2-fucosyltransferase | |||
| 1295 | exodeoxyribonuclease VII large subunit | |||
| 1300 | M | M.HpyPO10XII (98% identity) | TCGA | M.Hpy7CORF1300P |
| 1305 | 204 aa hypothetical protein | |||
| 1305 | 204 aa hypothetical protein | |||
| 1310 | R | HpyPE02ORF1650P (96% identity) | CCGG | Hpy7CORF1315P |
| 1315 | M | M.HpyPO105IV (99% identity) | CCGG | M.Hpy7CORF1315P |
| 1320 | ATP-dependent chaperone ClpB | |||
| 2270 | 369 aa hypothetical protein | |||
| 2275 | M | M.HpyKG3II (96% identity) | ATTAAT | M.Hpy7CORF2275P |
| 2280 | glycosyltransferase 9 family protein | |||
| 2285 | GTP-binding protein TypA | |||
| 2290 | M | M.HpyPOR114ORF2275P (98% identity) | ACGT | M.Hpy7CORF2290P |
| 2295 | R | Hpyoh1ORF5085P (98% identity) | ACGT | Hpy7CORF2290P |
| 2300 | catalase | |||
| 3255 | 3-5 exonuclease | |||
| 3260 | R | HpySWT12ORF3110P (100% identity) | CCNNGG | Hpy7CORF3265P |
| 3265 | M | M.Hpyfe62ORF3865P (100% identity) | CCNNGG | M.Hpy7CORF3265P |
| 3270 | 3-5 exonuclease | |||
| 3345 | 270 aa hypothetical protein | |||
| 3350 | RM | HpySP807ORF3485P (89% identity) | Hpy7CORF3350P | |
| 3355 | glycerol-3-phosphate dehydrogenase | |||
| 4015 | 403 aa hypothetical protein | |||
| 4020 | R | HpyGE2XP (97% identity) | GTAC | Hpy7CORF4025P |
| 4025 | M | M.HpyDO4IX (96% identity) | GTAC | M.Hpy7CORF4025P |
| 4030 | DNA topoisomerase IV subunit B | |||
| 4220 | flagellar biosynthesis protein FlgE | |||
| 4225 | R | HpyLI07XIIIP (92% identity) | GTNNAC | Hpy7CORF4230P |
| 4230 | M | M.HpyCRI5X (96% identity) | GTNNAC | M.Hpy7CORF4230P |
| 4235 | ATP-dependent DNA helicase | |||
| 5105 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5110 | M | M.HpyC82ORFFP (94% identity) | TCNNGA | M.Hpy7CORF5110P |
| 5115 | R | HpySW12ORF5355P (93% identity) | TCNNGA | Hpy7CORF5110P |
| 5120 | Laminin subunit alpha-2 precursor | |||
| 5295 | 144 aa hypothetical protein | |||
| 5300 | M | M.HpyPOR112XIII (97% identity) | GCGC | M.Hpy7CORF5300P |
| 5305 | flagellar biosynthesis protein FlgM | |||
| 5750 | hydrolase | |||
| 5755 | M | M.HpyPO01I (97% identity) | CATG | M.Hpy7CORF5755P |
| 5760 | R | HpySP703IP (74% identity) | CATG | Hpy7CORF5755P |
| 5765 | pseudogene | |||
| 6530 | glycosyltransferase 9 family protein | |||
| 6535 | R | HpyNCI23IVP (97% identity) | GANTC | Hpy7CORF6540P |
| 6540 | M | M.HpyU406VI (99% identity) | GANTC | M.Hpy7CORF6540P |
| ??? | Type IIG R-M system | |||
| 6540 | DNA methyltransferase | |||
| ??? | RM | HpySP311ORF6425P (83% identity) | Hpy7CORF6545P | |
| 6560 | nicotinate-nucleotide pyrophosphorylase | |||
| 6610 | two-component system response regulator | |||
| 6615 | R | HpyC80XIVP (98% identity) | GAAGA | Hpy7CORF6620P |
| 6620 | M | M1.HpyU005XII (98% identity) | GAAGA | M1.Hpy7CORF6620P |
| 6625 | M | M1.HpyH024V (99% identity) | GAAGA | M2.Hpy7CORF6620P |
| 6630 | adenine methyltransferase | |||
| 6755 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6760 | M | M.HpyU008ORF980P (96% identity) | GAATTC | M.Hpy7CORF6760P |
| 6765 | R | HpyT001ORF6855P (86% identity) | Hpy7CORF6760P | |
| 6770 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7040 | DNA polymerase I | |||
| 7045 | S | S.HpyI013ORF7050P (63% identity) | S1.Hpy7CORF7055P | |
| 7050 | S | S.HpyK052ORF6785P (29% identity) | S2.Hpy7CORF7055P | |
| 7055 | RM | HpyU008ORF7130P (98% identity) | Hpy7CORF7055P | |
| 7060 | amidophosphoribosyltransferase | |||
| 7285 | 171 aa hypothetical protein | |||
| 7290 | RM | HpyHORF1395P (92% identity) | Hpy7CORF7290P | |
| 7295 | 718 aa hypothetical protein | |||
| 7470 | 67 aa hypothetical protein | |||
| 7475 | M | M.Hpy478AORFBP (98% identity) | TGCA | M.Hpy7CORF7475P |
| 7480 | R | HpyCOL110XVP (99% identity) | TGCA | Hpy7CORF7475P |
| 7485 | cytochrome C | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3720 | 54 aa hypothetical protein | |||
| 3725 | M | M.HpyC20ORFFP (98% identity) | M.Hpy7CORF3725P | |
| 3730 | R | HpySP07XVIP (95% identity) | Hpy7CORF3725P | |
| 3735 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 6625 | restriction endonuclease subunit M | |||
| 6630 | M | M.Hpy7CORFAP (67% identity) | M.Hpy7CORF6630P | |
| 6635 | R | HpyC123ORF6645P (93% identity) | Hpy7CORF6630P | |
| 6640 | rod shape-determining protein MreC | |||
| 6625 | restriction endonuclease subunit M | |||
| ??? | M | M.Hpy7CORF6630P (67% identity) | M.Hpy7CORFAP | |
| 6635 | restriction endonuclease subunit R | |||
| 6685 | endonuclease | |||
| 6690 | M | M.HpyG8GORFLP (95% identity) | M.Hpy7CORF6690P | |
| 6695 | R | HpySP601ORF320P (86% identity) | Hpy7CORF6690P | |
| 6700 | biotin synthase | |||
| 7295 | 718 aa hypothetical protein | |||
| 7300 | R | HpyI010ORF7175P (95% identity) | Hpy7CORF7305P | |
| ??? | M | M.HpyU105ORF6885P (78% identity) | M.Hpy7CORF7305P | |
| 7315 | ATP-dependent DNA helicase RecG | |||