Helicobacter pylori Shi470 |
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Putative Helicobacter pylori Shi470 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 10619
Complete sequence: 1,608,548 bp
GenBank #: CP001072 (NC_010698)
REBASE acronym: HpyS
Org_num: 5082
All begin HPSH_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2260 | polyphosphate kinase | |||
| 2265 | S | S.HpySH011ORF2310P (100% identity) | S.HpySORF2270P | |
| 2270 | M | M.HpySH011ORF2310P (99% identity) | M.HpySORF2270P | |
| 2275 | R | HpyPU002IIIP (95% identity) | HpySORF2270P | |
| 2280 | 631 aa hypothetical protein | |||
| 2555 | site-specific DNA methyltransferase | |||
| 2560 | M | M.HpySH014XIII (98% identity) | M.HpySORF2560P | |
| 2565 | S | S.HpyK112IV (97% identity) | S.HpySORF2560P | |
| 2570 | R | HpySH014XIIIP (98% identity) | HpySORF2560P | |
| 2575 | hydroxyethylthiazole kinase | |||
| 2860 | cadmium-transporting ATPase | |||
| 2865 | S | S.Hpy828ORF4000P (97% identity) | S.HpySORF2865P | |
| 2870 | outer membrane protein HofF | |||
| 7295 | 30 aa hypothetical protein | |||
| 7300 | S | S.HpySH014VI (97% identity) | S.HpySORF7300P | |
| 7305 | formyltetrahydrofolate hydrolase (purU) | |||
| 7880 | 30 aa hypothetical protein | |||
| 7885 | S | S.HpyGE6XII (94% identity) | S.HpySORF7890P | |
| 7890 | M | M.HpySH011ORF7325P (99% identity) | M.HpySORF7890P | |
| 7895 | R | HpySH011ORF7325P (99% identity) | HpySORF7890P | |
| 7900 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | 330 aa hypothetical protein | |||
| 245 | M | M1.HpySH011V (100% identity) | CCTC | M1.HpySORF245P |
| 250 | M | M2.HpySH011VP (99% identity) | CCTC | M2.HpySORF245P |
| ??? | R | HpySH011VP (97% identity) | CCTC | HpySORF245P |
| 265 | adenine/cytosine DNA methyltransferase | |||
| 445 | malonyl coenzyme A-acyl carrier protein | |||
| 450 | R | HpySH011VIIIP (100% identity) | GATC | HpySORF465P |
| 465 | M | M.Hpy169ORF440P (99% identity) | GATC | M.HpySORF465P |
| 470 | alpha-1,2-fucosyltransferase | |||
| 1345 | exodeoxyribonuclease VII large subunit | |||
| 1350 | M | M.HpySH014XI (100% identity) | TCGA | M.HpySORF1350P |
| 1355 | pseudogene | |||
| 1355 | pseudogene | |||
| 1365 | R | HpyAs010ORF1275P (98% identity) | CCGG | HpySORF1370P |
| 1370 | M | M.Hpy4ORF1335P (99% identity) | CCGG | M.HpySORF1370P |
| 1375 | ATP-dependent protease binding subunit (clpB) | |||
| 1605 | pseudogene | |||
| 1615 | R | HpySH011VIP (100% identity) | CTNAG | HpySORF1620P |
| 1620 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.HpySORF1620P |
| 1625 | 118 aa hypothetical protein | |||
| 1835 | GTP-binding protein LepA | |||
| 1840 | M | M.HpyH012ORF1710P (99% identity) | GCNGC | M.HpySORF1840P |
| 1845 | 156 aa hypothetical protein | |||
| 2360 | 599 aa hypothetical protein | |||
| 2365 | M | M.HpySH011II (99% identity) | ACNGT | M.HpySORF2365P |
| 2370 | R | HpySH011IIP (100% identity) | ACNGT | HpySORF2365P |
| 2375 | type II DNA modification enzyme | |||
| 2370 | type II restriction endonuclease | |||
| 2375 | M | M.HpySH011ORF2415P (100% identity) | ACGT | M.HpySORF2375P |
| ??? | R | HpySH011ORF2415P (100% identity) | ACGT | HpySORF2375P |
| 2390 | 55 aa hypothetical protein | |||
| 2545 | 225 aa hypothetical protein | |||
| 2550 | R | HpySH010ORF2695P (100% identity) | GGCC | HpySORF2550P |
| 2555 | M | M.HpySH014ORF4180P (100% identity) | GGCC | M.HpySORF2550P |
| 2560 | type I restriction enzyme M protein (hsdM) | |||
| 3410 | 133 aa hypothetical protein | |||
| 3415 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpySORF3420P |
| 3420 | M | M.HpySH014IV (100% identity) | CCNNGG | M.HpySORF3420P |
| 3425 | 270 aa hypothetical protein | |||
| 3510 | 32 aa hypothetical protein | |||
| ??? | RM | HpyPE111ORF3290P (96% identity) | HpySORF3515P | |
| 3525 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 4780 | flagellar hook protein FlgE | |||
| 4785 | R | Hpy417ORF4415P (98% identity) | GTNNAC | HpySORF4790P |
| 4790 | M | M.HpySH011IX (100% identity) | GTNNAC | M.HpySORF4790P |
| 4795 | rep helicase, single-stranded DNA-dependent | |||
| 5565 | biotin carboxylase | |||
| 5570 | M | M.HpySH011X (100% identity) | TCNNGA | M.HpySORF5570P |
| 5575 | R | HpySH011XP (100% identity) | TCNNGA | HpySORF5570P |
| 5580 | 214 aa hypothetical protein | |||
| 5765 | 144 aa hypothetical protein | |||
| 5770 | M | M.Hpy464ORF5370P (100% identity) | GCGC | M.HpySORF5770P |
| 5775 | 29 aa hypothetical protein | |||
| 6250 | 222 aa hypothetical protein | |||
| 6255 | M | M.HpySH011I (100% identity) | CATG | M.HpySORF6255P |
| 6260 | 47 aa hypothetical protein | |||
| 6985 | protease | |||
| 6990 | RM | adenine specific DNA methyltransferase | HpySORF6990AP | |
| 6995 | 297 aa hypothetical protein | |||
| 7000 | adenine specific DNA methyltransferase (HINFIM) | |||
| ??? | RM | Hpy238ORF275P (93% identity) | HpySORF6990BP | |
| 7015 | nicotinate-nucleotide pyrophosphorylase | |||
| 6990 | adenine specific DNA methyltransferase | |||
| 6995 | R | Hpy464ORF6555P (99% identity) | GANTC | HpySORF7000P |
| 7000 | M | M.HpySH011VII (100% identity) | GANTC | M.HpySORF7000P |
| ??? | 1169 aa hypothetical protein HPSH_07010 | |||
| 7065 | transcriptional regulator | |||
| 7070 | R | HpySH011ORF6585P (99% identity) | GAAGA | HpySORF7070P |
| 7075 | type II restriction endonuclease | |||
| 7070 | type IIS restriction enzyme R protein (MBOIIR) | |||
| 7075 | R | Hpy464ORF6630P (100% identity) | GATATC | HpySORF7080P |
| 7080 | M | M.Hpy464ORF6630P (100% identity) | GATATC | M.HpySORF7080P |
| ??? | Adenine-specific DNA methylase | |||
| 7530 | DNA polymerase I (polA) | |||
| 7535 | S | S1.Hpy169ORF7250P (100% identity) | S.HpySORF7540P | |
| 7540 | RM | Hpy53ORFKP (96% identity) | HpySORF7540P | |
| 7545 | 191 aa hypothetical protein | |||
| 7800 | 174 aa hypothetical protein | |||
| 7805 | RM | HpySH011ORF7250P (98% identity) | HpySORF7805P | |
| 7810 | type III restriction enzyme | |||
| 7985 | 67 aa hypothetical protein | |||
| 7990 | M | M.HpySH011XI (99% identity) | TGCA | M.HpySORF7990P |
| 7995 | R | HpySH011XIP (100% identity) | TGCA | HpySORF7990P |
| 8000 | 150 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7080 | adenine-specific DNA metylase | |||
| ??? | M | M.HpyME24ORF6745P (90% identity) | M.HpySORF7085P | |
| 7095 | R | Hpy4ORF4130P (97% identity) | HpySORF7085P | |
| 7100 | rod shape-determining protein | |||
| 7150 | endonuclease | |||
| 7155 | M | M.HpySH011ORF6665P (99% identity) | M.HpySORF7155P | |
| ??? | R | HpySH011ORF6665P (97% identity) | HpySORF7155P | |
| 7170 | biotin synthase | |||
| 7805 | type II DNA modification enzyme | |||
| 7810 | R | HpySH014ORF7240P (99% identity) | HpySORF7815P | |
| 7815 | M | M.HpyAs006ORF7345P (99% identity) | M.HpySORF7815P | |
| 7820 | DNA recombinase (recG) | |||