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Putative Escherichia coli SF-088 RM systems
Ref: Stephens,C.M. et al. unpublished
REBASE ref # 21004
Complete sequence: 5,048,243 bp
GenBank #: CP012635
REBASE acronym: EcoSF088
Org_num: 16842
All begin AN203_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
20510 | restriction endonuclease | |||
20515 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoSF088ORF20515P |
20520 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoSF088ORF20515P |
20525 | R | EcoDP254ORF21685P (100% identity) | RTACNNNNGTG | EcoSF088ORF20515P |
20530 | endoribonuclease SymE | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1755 | cell division protein DamX | |||
1760 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSF088DamP |
1765 | ribulose phosphate epimerase | |||
2370 | 59 aa hypothetical protein | |||
2375 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSF088ORF2375P |
2380 | Fis family transcriptional regulator | |||
9630 | hydrolase | |||
9635 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoSF088DcmP |
9640 | V | V.SflC32DcmP (74% identity) | V.EcoSF088DcmP | |
9645 | multidrug DMT transporter | |||
13315 | 75 aa hypothetical protein | |||
13335 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSF088ORF13335P |
13340 | TrmB family transcriptional regulator | |||
20760 | restriction endonuclease | |||
20765 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoSF088ORF20770P |
??? | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoSF088ORF20770P |
20775 | M | M2.EcosEC4ORF20110P (99% identity) | GGTCTC | M2.EcoSF088ORF20770P |
20780 | ATP-binding protein | |||
24160 | 330 aa hypothetical protein | |||
24165 | M | M.SflFF35ORF20P (100% identity) | GGCC | M.EcoSF088ORF24165P |
24170 | 77 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
9425 | type IV pilin | |||
9430 | R | Sensp14178ORF9290P (100% identity) | EcoSF088ORF9435P | |
9435 | M | M.Sensp14178ORF9290P (100% identity) | M.EcoSF088ORF9435P | |
9440 | integrase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
20750 | pseudogene | |||
20755 | R | EcosS3McrBP (100% identity) | EcoSF088McrBP | |
20760 | R | EcosS9McrCP (100% identity) | EcoSF088McrCP | |
20765 | restriction endonuclease | |||
Orphan M | ||||
ORF | Gene | Most similar | Specificity | Name |
14225 | protein ninE | |||
14230 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSF088ORF14230P |
14235 | 146 aa hypothetical protein |