Uncultured Desulfofustis sp. PB-SRB1 |
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Putative Uncultured Desulfofustis sp. PB-SRB1 RM systems
Ref: Wilbanks,E.G. et al. unpublished
REBASE ref # 20176
Contig set: 3,683,433 bp
GenBank #: AVFQ00000000 (NZ_AVFQ00000000)
REBASE acronym: DspSRB1
Org_num: 13435
All begin N839_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18310 | RNA-directed DNA polymerase | |||
| ??? | S | S.Mme286ORFUP (96% identity) | S.DspSRB1ORF18335P | |
| ??? | M | M.Mme286ORFUP (93% identity) | M.DspSRB1ORF18335P | |
| 18335 | 52 aa hypothetical protein | |||
| 6990 | 272 aa hypothetical protein | |||
| 6995 | S | S.Mme286ORFUP (100% identity) | S.DspSRB1ORF7005P | |
| ??? | M | M.Mme286ORFUP (100% identity) | M.DspSRB1ORF7005P | |
| 7010 | 116 aa hypothetical protein | |||
| 20460 | transposase | |||
| ??? | M | M.Mme286ORFUP (97% identity) | M.DspSRB1ORF20465P | |
| ??? | S | S.Mme286ORFUP (62% identity) | S.DspSRB1ORF20465P | |
| 20485 | IS3 family transposase | |||
| 13440 | XRE family transcriptional regulator | |||
| 13445 | R | Mme286ORFQP (100% identity) | CCCNNNNNNTGCG | DspSRB1IIP |
| 13450 | DNA binding domain-containing protein | |||
| 13455 | restriction endonuclease | |||
| 13460 | S | S.Mme286ORFQP (100% identity) | CCCNNNNNNTGCG | S.DspSRB1II |
| 13465 | M | M2.Mme286ORFQP (100% identity) | CCCNNNNNNTGCG | M2.DspSRB1II |
| 13470 | GxxExxY protein | |||
| 13475 | M | M1.Mme286ORFQP (100% identity) | CCCNNNNNNTGCG | M1.DspSRB1II |
| 13480 | excisionase family DNA-binding protein | |||
| 16200 | DUF3696 domain-containing protein | |||
| 16205 | M | M.Mme286ORFVP (100% identity) | GCANNNNNNNGTTG | M.DspSRB1III |
| 16210 | DUF1016 family protein | |||
| ??? | S | S2.Mme286ORFVP (100% identity) | GCANNNNNNNGTTG | S.DspSRB1III |
| 16220 | R | Mme286ORFVP (95% identity) | GCANNNNNNNGTTG | DspSRB1IIIP |
| 16225 | helix-turn-helix domain-containing protein | |||
| 16235 | 57 aa hypothetical protein | |||
| 16240 | R | Mme286ORFUP (99% identity) | DspSRB1ORF16290P | |
| 16245 | S8 family peptidase | |||
| 16250 | ATP-binding protein | |||
| 16255 | 54 aa hypothetical protein | |||
| 16260 | 95 aa hypothetical protein | |||
| 16265 | 107 aa hypothetical protein | |||
| 16270 | IS3 family transposase | |||
| 16275 | 429 aa hypothetical protein | |||
| 16280 | S | S.Mme286ORFUP (100% identity) | S.DspSRB1ORF16290P | |
| ??? | M | M.Mme286ORFUP (99% identity) | M.DspSRB1ORF16290P | |
| 16305 | 78 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | V | V.DspSRB1ORF12075P (42% identity) | V.DspSRB1ORF16850P | |
| 16850 | M | M.Mme286ORFK1P (94% identity) | M.DspSRB1ORF16850P | |
| ??? | R | Mme286ORFK1P (85% identity) | DspSRB1ORF16850P | |
| 16860 | transposase | |||
| 12065 | 62 aa hypothetical protein | |||
| 12070 | R | Mme286ORFK1P (95% identity) | DspSRB1ORF12075P | |
| 12075 | M | M.Mme286ORFK1P (100% identity) | M.DspSRB1ORF12075P | |
| 12080 | V | V.Mme286ORFK1P (88% identity) | V.DspSRB1ORF12075P | |
| 12085 | 730 aa hypothetical protein | |||
| 12625 | IS1634 family transposase | |||
| 12630 | R | Mme286ORFJ1P (100% identity) | CTGCAG | DspSRB1IP |
| 12635 | M | M.Mme286ORFJ1P (100% identity) | CTGCAG | M.DspSRB1I |
| 12640 | helix-turn-helix domain-containing protein | |||
| 11570 | DUF3696 domain-containing protein | |||
| 11575 | M | M.Mme286ORFPP (99% identity) | M.DspSRB1ORF11575P | |
| 11580 | ATP-binding protein | |||
| 22410 | PIN domain-containing protein | |||
| 22415 | RM | Mme286ORFIP (87% identity) | DspSRB1ORF22425P | |
| 22420 | 95 aa hypothetical protein | |||
| 13800 | GxxExxY protein | |||
| 13805 | M | M.Mme286ORFN1P (98% identity) | M.DspSRB1ORF13810P | |
| 13810 | DNA binding domain-containing protein | |||
| 15015 | MFS transporter | |||
| 15020 | M | M.Mme286ORFRP (98% identity) | M.DspSRB1ORF15025P | |
| 15025 | R | Mme286ORFRP (88% identity) | DspSRB1ORF15025P | |
| 15030 | phosphoribosylformylglycinamidine synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12960 | 64 aa hypothetical protein | |||
| 12965 | M | M.Mme286ORFL1P (94% identity) | M.DspSRB1ORF12970P | |
| 12970 | nucleotidyltransferase domain-containing | |||
| 12975 | DUF86 domain-containing protein | |||
| 12980 | R | Mme286ORFL1P (100% identity) | DspSRB1ORF12970P | |
| 12985 | type II toxin-antitoxin system Phd/YefM family | |||
| 5570 | 141 aa hypothetical protein | |||
| 5575 | M | M.Mme286ORFM1P (100% identity) | M.DspSRB1ORF5575P | |
| 5580 | AAA family ATPase | |||
| 5585 | DUF4276 family protein | |||
| 5590 | R | Mme286ORFM1P (90% identity) | DspSRB1ORF5575P | |
| 5595 | FAD-dependent oxidoreductase | |||