Salmonella enterica subsp. enterica serovar Agona 28.O.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 28.O.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,735,961 bp
GenBank #: CASP00000000 (NZ_CASP00000000)
REBASE acronym: Sen28O08
Org_num: 16217
All begin SA28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3324 | protein TIR | |||
| 3325 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen28O08ORF3325P |
| 3326 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen28O08ORF3325P |
| 3327 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen28O08ORF3325P |
| 3328 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen28O08ORF3325P |
| 3329 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3308 | 97 aa hypothetical protein | |||
| 3309 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen28O08ORF3309P |
| 3310 | 670 aa hypothetical protein | |||
| 1357 | periplasmic protein | |||
| 1358 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen28O08ORF1358P |
| 1359 | DNA-binding protein Fis | |||
| 4662 | carboxylate/amino acid/amine transporter | |||
| 4663 | V | V.StyUK1DcmP (100% identity) | V.Sen28O08DcmP | |
| 4664 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen28O08DcmP |
| 4665 | metal dependent phosphohydrolase | |||
| 4686 | protein DamX | |||
| 4687 | M | M.StyTDamP (100% identity) | GATC | M.Sen28O08DamP |
| 4688 | ribulose-phosphate 3-epimerase | |||
| 527 | DksA/TraR family C4-type zinc finger protein | |||
| 528 | M | M.SenSA5ORF21849P (100% identity) | GATC | M.Sen28O08ORF528P |
| 529 | bacteriophage replication gene A | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3718 | major facilitator superfamily MFS_1 | |||
| 3719 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen28O08ORF3719P |
| 3720 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen28O08ORF3719P |
| 3721 | cyanide-insensitive oxidase CioA | |||