Salmonella enterica subsp. enterica serovar Agona 40.E.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 40.E.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,813,151 bp
GenBank #: CASE00000000 (NZ_CASE00000000)
REBASE acronym: Sen40E08
Org_num: 16208
All begin SA40A_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3043 | protein TIR | |||
| 3044 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen40E08ORF3044P |
| 3045 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen40E08ORF3044P |
| 3046 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen40E08ORF3044P |
| 3047 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen40E08ORF3044P |
| 3048 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3027 | 97 aa hypothetical protein | |||
| 3028 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen40E08ORF3028P |
| 3029 | 670 aa hypothetical protein | |||
| 2059 | metal dependent phosphohydrolase | |||
| 2060 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen40E08DcmP |
| 2061 | V | V.StyUK1DcmP (100% identity) | V.Sen40E08DcmP | |
| 2062 | carboxylate/amino acid/amine transporter | |||
| 4331 | periplasmic protein | |||
| 4332 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen40E08ORF4332P |
| 4333 | DNA-binding protein Fis | |||
| 4701 | protein DamX | |||
| 4702 | M | M.StyTDamP (100% identity) | GATC | M.Sen40E08DamP |
| 4703 | ribulose-phosphate 3-epimerase | |||
| 3601 | Phage transcriptional activator, Ogr/delta | |||
| 3602 | M | M.SenS021ORF22590P (99% identity) | M.Sen40E08ORF3602P | |
| 3603 | Replication gene A protein | |||
| 3604 | Predicted prophage protein | |||
| 3605 | M | M.SenST203ORF20895P (99% identity) | GATC | M.Sen40E08ORF3605P |
| 3606 | uncharacterized protein | |||
| 476 | 113 aa hypothetical protein | |||
| 477 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen40E08ORF477P |
| 478 | bacteriophage replication gene A | |||
| 479 | 62 aa hypothetical protein | |||
| 480 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen40E08ORF480P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen40E08ORF480P |
| 482 | pbsx family phage portal protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 728 | major facilitator superfamily MFS_1 | |||
| 729 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen40E08ORF729P |
| 730 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen40E08ORF729P |
| 731 | cyanide-insensitive oxidase CioA | |||