Escherichia coli O157:H7 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O157:H7 RM systems
Ref: Amadio,A.F. et al. Genome Announc 3 (3), e00617-15 (2015)
REBASE ref # 19810
| Sequence length: | GenBank #: | |
| Chromosome: | 5,425,690 bp | LAYW00000000 (NZ_LAYW00000000) |
| Chromosome: | 5,544,602 bp | CP076230 |
| plasmid pO157: | 94,756 bp | CP076231 |
REBASE acronym: EcoRap
Org_num: 16279
All begin XF37_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 26995 | endoribonuclease SymE | |||
| 27000 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoRapORF27005P |
| 27005 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoRapORF27005P |
| 27010 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoRapORF27005P |
| 27015 | 94 aa hypothetical protein | |||
| Chromosome | ||||
| 24360 | DUF262 domain-containing protein | |||
| 24365 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoRapORF27005P |
| 24370 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoRapORF27005P |
| 24375 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoRapORF27005P |
| 24380 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28365 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoRapORF28365P | |
| 28380 | 101 aa hypothetical protein | |||
| 26385 | M | M.EcoZ910ORF13805P (99% identity) | M.EcoRapORF26385P | |
| 26390 | TrmB family transcriptional regulator | |||
| 26540 | ninB protein | |||
| 26545 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoRapORF26545P |
| 5305 | Eae protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoRapORFAP | |
| 5320 | 65 aa hypothetical protein | |||
| 24500 | 101 aa hypothetical protein | |||
| 24505 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoRapORF24505P | |
| 24510 | 73 aa hypothetical protein | |||
| 11100 | 59 aa hypothetical protein | |||
| 11105 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoRapORF11105P |
| 11110 | Fis family transcriptional regulator | |||
| 26720 | helicase | |||
| 26725 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoRapORF26725P |
| 15675 | multidrug DMT transporter | |||
| 15680 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.EcoRapDcmP |
| 15685 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoRapDcmP |
| 15690 | hydrolase | |||
| 7425 | 70 aa hypothetical protein | |||
| 7430 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoRapORF7430P |
| 7435 | 67 aa hypothetical protein | |||
| 22085 | cell division protein DamX | |||
| 22090 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRapDamP |
| 22095 | ribulose-phosphate 3-epimerase | |||
| Chromosome | ||||
| 2385 | cell division protein DamX | |||
| 2390 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRapDamP |
| 2395 | ribulose-phosphate 3-epimerase | |||
| 2900 | DUF2556 family protein | |||
| 2905 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoRapORF11105P |
| 2910 | DNA-binding transcriptional regulator Fis | |||
| 7560 | DUF1382 family protein | |||
| 7565 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoRapORF7430P |
| 7570 | 76 aa hypothetical protein | |||
| 7740 | recombination protein NinB | |||
| 7745 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoRapORF26545P |
| 7750 | NinE family protein | |||
| 10285 | recombination protein NinB | |||
| 10290 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoRapORF10290P |
| 10295 | NinE family protein | |||
| 11090 | phosphohydrolase | |||
| 11095 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoRapDcmP |
| 11100 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.EcoRapDcmP |
| 11105 | drug/metabolite exporter YedA | |||
| 15075 | DUF1737 domain-containing protein | |||
| 15085 | M | M.EcoTWORF1742P (100% identity) | M.EcoRapORF15085P | |
| 15090 | TrmB family transcriptional regulator | |||
| 15470 | DUF1737 domain-containing protein | |||
| 15485 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoRapORF28365P | |
| 15490 | TrmB family transcriptional regulator | |||
| 24595 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoRapORF26725P |
| 24600 | DEAD/DEAH box helicase | |||
| 24630 | N-acetylneuraminic acid mutarotase | |||
| 24635 | R | EcosPA8ORF17350P (100% identity) | EcoRapORF24635P | |
| 24640 | transposase | |||
| plasmid pO157 | ||||
| 27625 | 101 aa hypothetical protein | |||
| 27630 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoRapORF24505P | |
| 27635 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24380 | endoribonuclease SymE | |||
| 24385 | R | EcosPA8GmrSDP (55% identity) | EcoRapGmrDP | |
| 24390 | R | Ecos1613GmrSP (100% identity) | EcoRapGmrSP | |
| 24395 | DUF1127 domain-containing protein | |||