Prevotella intermedia 17-2 |
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Putative Prevotella intermedia 17-2 RM systems
Ref: Nambu,T. unpublished
REBASE ref # 19915
| Sequence length: | GenBank #: | |
| chromosome 1: | 606,227 bp | AP014926 |
| chromosome 2: | 2,131,046 bp | AP014925 |
REBASE acronym: Pin172
Org_num: 15985
All begin PI172_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2476 | integrase | |||
| 2477 | S | S1.Pin17ORF406P (69% identity) | S1.Pin172ORF2481P | |
| 2478 | 41 aa hypothetical protein | |||
| 2479 | S | S2.Pin17ORF406P (100% identity) | S2.Pin172ORF2481P | |
| 2480 | DNA-binding protein in cluster with | |||
| 2481 | M | M.Pin17ORF406P (100% identity) | M.Pin172ORF2481P | |
| 2482 | 567 aa hypothetical protein | |||
| 2483 | R | Pin17ORF406P (100% identity) | Pin172ORF2481P | |
| ??? | C | C.PinWW414ORF5835P (100% identity) | C.Pin172ORF2481P | |
| 2484 | mobile element protein | |||
| chromosome 2 | ||||
| 280 | 92 aa hypothetical protein | |||
| 281 | S | S.Pin17FIV (100% identity) | S.Pin172ORF283P | |
| 282 | 377 aa hypothetical protein | |||
| 283 | M | M.Pin17ORF476P (100% identity) | M.Pin172ORF283P | |
| 284 | R | Pin17ORF476P (100% identity) | Pin172ORF283P | |
| 285 | predicted metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1950 | helicase domain protein | |||
| 1951 | RM | Pin172ORF2502P (87% identity) | Pin172ORF1951P | |
| 1952 | M | Pin17ORF429P (15% identity) | M.Pin172ORF1951P | |
| 1953 | resolvase | |||
| 2279 | 1081 aa hypothetical protein | |||
| 2280 | R | Pin17FORF11110P (100% identity) | Pin172ORF2280P | |
| 2281 | 3-oxoacyl-[acyl-carrier protein] reductase | |||
| 2309 | R | Pin17ORF250P (100% identity) | GGATG | Pin172ORF2310P |
| 2310 | M | M1.Pin17ORF250P (100% identity) | GGATG | M1.Pin172ORF2310P |
| 2311 | M | M2.Pin17ORF250P (100% identity) | GGATG | M2.Pin172ORF2310P |
| 2312 | 45 aa hypothetical protein | |||
| 2501 | helicase domain protein | |||
| 2502 | RM | Pin17FIII (98% identity) | Pin172ORF2502P | |
| 2503 | type IIS restriction/modification | |||
| chromosome 2 | ||||
| 632 | thymidylate synthase | |||
| 633 | M | M.Pin17ORF43P (100% identity) | M.Pin172ORF633P | |
| 634 | 62 aa hypothetical protein | |||
| 838 | 40 aa hypothetical protein | |||
| 839 | M | M2.Pin17ORF1858P (100% identity) | GATC | M2.Pin172ORF839P |
| 840 | M | M1.Pin17ORF1858P (100% identity) | GATC | M1.Pin172ORF839P |
| 841 | 293 aa hypothetical protein | |||
| 1784 | thymidylate synthase | |||
| 1785 | M | M.Pin17ORF894P (100% identity) | M.Pin172ORF1785P | |
| 1786 | 62 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2189 | 65 aa hypothetical protein | |||
| 2190 | R | Pin17McrBP (100% identity) | Pin172McrBP | |
| 2191 | R | Pin17FMcrCP (100% identity) | Pin172McrCP | |
| 2192 | 64 aa hypothetical protein | |||