Peptoclostridium difficile ATCC 9689 = DSM 1296 DSM1296 |
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Putative Peptoclostridium difficile ATCC 9689 = DSM 1296 DSM1296 RM systems
Ref: Riedel,T. et al. unpublished
REBASE ref # 19234
| Sequence length: | GenBank #: | |
| Chromosome: | 4,109,692 bp | CP011968 |
| plasmid unnamed: | 45,187 bp | CP011969 |
REBASE acronym: Pdi9689
Org_num: 16054
All begin CDIF1296T_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3154 | 687 aa hypothetical protein | |||
| 3155 | R | CdiCd28ORF14895P (100% identity) | CANNNNNNNTAAAG | Pdi9689IIP |
| 3156 | 142 aa hypothetical protein | |||
| 3157 | DNA polymerase subunit beta | |||
| 3158 | 102 aa hypothetical protein | |||
| 3159 | S | S.CdiTTORFCP (100% identity) | CANNNNNNNTAAAG | S.Pdi9689II |
| 3160 | M | M.CdiTTII (100% identity) | CANNNNNNNTAAAG | M.Pdi9689II |
| 3161 | tagatose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2895 | phospholipase | |||
| 2896 | M | M.CdiTTI (100% identity) | CAAAAA | M.Pdi9689I |
| 2897 | badm/rrf2 family transcriptional regulator | |||
| 3249 | two-component response regulator | |||
| 3250 | M | M.CdiCd8DndCP (100% identity) | M.Pdi9689DndCP | |
| 3251 | DNA sulfur modification protein DndD | |||
| 3250 | sulfurtransferase DndC | |||
| 3251 | M | M.CdiCd8DndDP (100% identity) | M.Pdi9689DndDP | |
| 3252 | DNA sulfur modification protein DndE | |||
| 3251 | DNA sulfur modification protein DndD | |||
| 3252 | M | M.CdiCd8DndEP (100% identity) | M.Pdi9689DndEP | |
| 3253 | 1078 aa hypothetical protein | |||
| plasmid unnamed | ||||
| 3832 | N-acetylmuramoyl-l-alanine amidase | |||
| ??? | M | M.CdiEW47ORFDP (100% identity) | M.Pdi9689ORF3833P | |
| 3835 | regulatory protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2187 | sigma-54-dependent transcriptional regulator | |||
| 2188 | R | CdiTTMcrCP (100% identity) | Pdi9689McrCP | |
| 2189 | R | CdiTTMcrBP (100% identity) | Pdi9689McrBP | |
| 2190 | cell division protein FtsZ | |||