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Putative Vibrio cholerae TSY216 RM systems
Ref: Okada,K. et al. Emerging Infect. Dis. 21 (7), 1262-1263 (2015)
REBASE ref # 19921
Sequence length: | GenBank #: | |
chromosome 1: | 3,053,204 bp | CP007653 |
chromosome 2: | 1,051,284 bp | CP007654 |
chromosome 3: | 896,006 bp | CP007655 |
REBASE acronym: Vch216
Org_num: 15990
All begin EN12_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
chromosome 1 | ||||
2940 | 316 aa hypothetical protein | |||
2945 | M | M.VchSXTORFAP (100% identity) | M.Vch216ORF2945P | |
2950 | S | S.VchSXTORFAP (100% identity) | S.Vch216ORF2945P | |
2955 | bstXI restriction endonuclease | |||
2955 | bstXI restriction endonuclease | |||
2960 | R | VchSXTORFAP (100% identity) | Vch216ORF2960P | |
2965 | ATPase AAA | |||
8560 | membrane protein | |||
8565 | R | VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | Vch216ORF8585P |
8570 | 663 aa hypothetical protein | |||
8575 | 470 aa hypothetical protein | |||
8580 | S | S.VspNIH41ORF1746P (99% identity) | AAGNNNNNNCATC | S.Vch216ORF8585P |
8585 | M | M.VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | M.Vch216ORF8585P |
8590 | 687 aa hypothetical protein | |||
chromosome 3 | ||||
23590 | 75 aa hypothetical protein | |||
23595 | S | S.Cco1377ORFHP (27% identity) | S.Vch216ORF23600P | |
23600 | 698 aa hypothetical protein | |||
23605 | R | Fsp2541ORF6860P (16% identity) | Vch216ORF23600P | |
23615 | 108 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome 1 | ||||
2950 | restriction endonuclease subunit S | |||
2955 | R | VchSXTORFBP (100% identity) | Vch216ORF2955P | |
2960 | DEAD/DEAH box helicase | |||
12755 | ribulose-phosphate 3-epimerase | |||
12760 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch216DamP |
12765 | cell division protein DamX | |||
chromosome 2 | ||||
14985 | guanosine 5-monophosphate oxidoreductase | |||
??? | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.Vch216ORF14990P |
14995 | 638 aa hypothetical protein | |||
15950 | hemagglutinin | |||
15955 | M | M.VspNIH41ORF3529P (94% identity) | M.Vch216ORF15955P | |
15960 | 141 aa hypothetical protein | |||
chromosome 3 | ||||
21555 | 208 aa hypothetical protein | |||
21560 | M | M.Vvu053ORF4992P (98% identity) | GGNCC | M.Vch216ORF21560P |
21565 | 415 aa hypothetical protein | |||
24205 | 128 aa hypothetical protein | |||
24210 | M | M.Vvu36ORF4940P (98% identity) | CCNGG | M.Vch216ORF24210P |
24215 | 82 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome 1 | ||||
2960 | DEAD/DEAH box helicase | |||
2965 | R | VchSXTMcrBP (100% identity) | Vch216McrBP | |
2970 | R | VchSXTMcrCP (100% identity) | Vch216McrCP | |
2975 | restriction endonuclease | |||
2970 | restriction endonuclease | |||
2975 | R | SxiVS1MrrP (100% identity) | Vch216MrrP | |
2980 | 93 aa hypothetical protein | |||
Orphan M | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome 3 | ||||
20375 | 209 aa hypothetical protein | |||
20380 | M | M.Vph998ORF25295P (99% identity) | GATC | M.Vch216ORF20380P |
20385 | 172 aa hypothetical protein |