Escherichia coli NMEC O18 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NMEC O18 RM systems
Ref: Mangiamele,P.M. et al. unpublished
REBASE ref # 19767
Complete sequence: 5,002,781 bp
GenBank #: CP007275
REBASE acronym: EcoNMEO18
Org_num: 15738
All begin NMECO18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 25225 | endoribonuclease SymE | |||
| 25235 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoNMEO18ORF25240P |
| 25240 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoNMEO18ORF25240P |
| 25250 | R | EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | EcoNMEO18ORF25240P |
| 25255 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3380 | antitermination protein | |||
| 3400 | M | M.SboBSORF1444P (100% identity) | M.EcoNMEO18ORF3400P | |
| 3430 | 73 aa hypothetical protein | |||
| 7910 | multidrug DMT transporter | |||
| 7915 | V | V.SflC32DcmP (74% identity) | V.EcoNMEO18DcmP | |
| 7920 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoNMEO18DcmP |
| 7925 | hydrolase | |||
| 13425 | LexA family transcriptional regulator | |||
| 13430 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoNMEO18ORF13430P |
| 13435 | 162 aa hypothetical protein | |||
| 17680 | Fis family transcriptional regulator | |||
| 17685 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoNMEO18ORF17685P |
| 17690 | 59 aa hypothetical protein | |||
| 18375 | ribulose-phosphate 3-epimerase | |||
| 18380 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoNMEO18DamP |
| 18390 | cell division protein DamX | |||
| 29110 | 162 aa hypothetical protein | |||
| 29115 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.EcoNMEO18ORF29115P |
| 29120 | LexA family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13200 | damage-inducible protein DinI | |||
| 13215 | R | EspFAAGmrSDP (100% identity) | EcoNMEO18GmrSDP | |
| 13220 | pseudogene | |||
| 25250 | DEAD/DEAH box helicase | |||
| 25255 | R | EcosS1MrrP (100% identity) | EcoNMEO18MrrP | |
| 25260 | GTP-binding protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2225 | 146 aa hypothetical protein | |||
| 2230 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoNMEO18ORF2230P |
| 2235 | protein ninE | |||