Vibrio cholerae |
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Putative Vibrio cholerae RM systems
Ref: Jones S,Lim. unpublished
REBASE ref # 19999
| Sequence length: | GenBank #: | |
| chromosome I: | 2,976,768 bp | LT897797 |
| plasmid pNDM-116-14: | 354,308 bp | LN831184 |
| plasmid pNDM-116-17: | 167,382 bp | LN831185 |
REBASE acronym: Vch11614
Org_num: 16110
All begin VCBK1071_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 1942 | hemin importer ATP-binding subunit | |||
| 1943 | S | S.Vch5434ORF12520P (69% identity) | S.Vch1071ORF1944P | |
| 1944 | M | M.Vci139882ORFBP (97% identity) | M.Vch1071ORF1944P | |
| 1945 | R | Vci139882ORFBP (99% identity) | Vch1071ORF1944P | |
| 1946 | EcoKMrr | |||
| plasmid pNDM-116-14 | ||||
| ??? | 164 aa hypothetical protein | |||
| ??? | M | M.SchDC57ORF5385P (98% identity) | M.Vch11614ORFAP | |
| ??? | S | S.PspHL130ORF4680P (57% identity) | S.Vch11614ORFAP | |
| ??? | Type I restriction-modification system, | |||
| ??? | R | VchVCC19ORFDP (99% identity) | Vch11614ORFAP | |
| ??? | 209 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 302 | cell division protein DamX | |||
| 303 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch1071DamP |
| 304 | Ribulose-phosphate 3-epimerase | |||
| 2633 | HSP90 family protein | |||
| 2634 | M | M.Vpas10329ORF1865P (100% identity) | M.Vch1071ORF2634P | |
| 2635 | DNA repair protein RadC | |||
| plasmid pNDM-116-14 | ||||
| ??? | 103 aa hypothetical protein | |||
| ??? | M | M.VpaVP92ORFBP (90% identity) | YGGCCR | M.Vch11614ORFBP |
| ??? | ATP-dependent DNA helicase UvrD/PcrA | |||
| plasmid pNDM-116-17 | ||||
| ??? | 80 aa hypothetical protein | |||
| ??? | M | M.Sma1978ORFAP (97% identity) | M.Vch11614ORFCP | |
| ??? | 149 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 1945 | Type-1 restriction enzyme R protein | |||
| 1946 | R | Vch5434MrrP (100% identity) | Vch1071MrrP | |
| 1947 | Competence protein | |||