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Putative Salmonella enterica subsp. enterica YU39 RM systems
Ref: Calva,E. et al. unpublished
REBASE ref # 20059
Sequence length: | GenBank #: | |
Chromosome: | 4,886,081 bp | CP011428 |
plasmid pYU39_89: | 88,949 bp | CP011430 |
REBASE acronym: SenYU39
Org_num: 15532
All begin SE14_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
4770 | endoribonuclease SymE | |||
4772 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenYU39ORF4773P |
4773 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenYU39ORF4773P |
4774 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenYU39ORF4773P |
4775 | restriction endonuclease | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1895 | disulfide bond formation protein B | |||
??? | M | M.SenSL26ORF9475P (100% identity) | M.SenYU39ORF1896P | |
1897 | TM2 domain-containing protein | |||
2132 | integral membrane protein | |||
2133 | V | V.StyUK1DcmP (100% identity) | V.SenYU39DcmP | |
2134 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenYU39DcmP |
2135 | metal-dependent phosphohydrolase | |||
2182 | crossover junction protein | |||
2183 | M | M.StyUK1V (100% identity) | GATC | M.SenYU39ORF2183P |
2184 | transcriptional activator | |||
2842 | Eaa protein | |||
2843 | M | M.Sen8545ORF5895P (100% identity) | M.SenYU39ORF2843P | |
2844 | 260 aa hypothetical protein | |||
3595 | DNA-binding protein Fis | |||
3596 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenYU39ORF3596P |
3597 | 54 aa hypothetical protein | |||
3698 | ribulose-phosphate 3-epimerase | |||
3699 | M | M.StyTDamP (100% identity) | GATC | M.SenYU39DamP |
3700 | DamX protein | |||
4737 | ABC-type sugar/spermidine/putrescine | |||
4738 | RM | StyUK1IV (100% identity) | GATCAG | SenYU39ORF4738P |
4739 | DNA repair ATPase | |||
plasmid pYU39_89 | ||||
5082 | 226 aa hypothetical protein | |||
5083 | M | M.SenYU0718ORF25295P (100% identity) | M.SenYU39ORF5083P | |
5084 | glutaminyl-tRNA synthetase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
434 | sialic acid transporter | |||
435 | M | M.StyUK1I (100% identity) | CAGAG | M.SenYU39ORF435P |
436 | R | StyUK1IP (99% identity) | CAGAG | SenYU39ORF435P |
437 | cytoplasmic protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
4774 | type I restriction enzyme EcoKI subunit R | |||
4775 | R | StyUK1MrrP (100% identity) | SenYU39MrrP | |
4776 | inner membrane protein |