Salmonella enterica subsp. enterica serovar Thompson ATCC 8391 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Thompson ATCC 8391 RM systems
Ref: Timme,R.E. et al. Genome Biol Evol 5 (11), 2109-2123 (2013)
REBASE ref # 17417
Complete sequence: 4,690,430 bp
GenBank #: CP011396
REBASE acronym: Sen8391
Org_num: 15528
All begin SEETH391_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18815 | membrane protein | |||
| 18820 | R | Spy5740IP (100% identity) | AGANNNNNNNNCTGG | Sen8391IP |
| 18825 | M | M.Spy5740I (100% identity) | AGANNNNNNNNCTGG | M.Sen8391I |
| 18830 | S | S.Spy5740I (100% identity) | AGANNNNNNNNCTGG | S.Sen8391I |
| 18835 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1780 | cell division protein DamX | |||
| 1785 | M | M.StyTDamP (100% identity) | GATC | M.Sen8391DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2265 | membrane protein | |||
| 2270 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen8391III |
| 2275 | Fis family transcriptional regulator | |||
| 8770 | hydrolase | |||
| 8775 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.Sen8391Dcm |
| 8780 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen8391DcmP |
| 8785 | multidrug DMT transporter | |||
| 18980 | 239 aa hypothetical protein | |||
| 18985 | R | Spy5740IVP (100% identity) | GGTACC | Sen8391IVP |
| 18990 | M | M.Spy5740IV (100% identity) | GGTACC | M.Sen8391IV |
| 18995 | 81 aa hypothetical protein L366_00304 | |||
| 21355 | replication protein | |||
| 21360 | M | M.Sen5741ORF75P (100% identity) | GATC | M.Sen8391ORF21360P |
| 21365 | 129 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16490 | 33 aa hypothetical protein | |||
| ??? | R | Ssp15303ORFGP (99% identity) | CAGAG | Sen8391IIP |
| 16500 | M | M.Spy5740II (100% identity) | CAGAG | M.Sen8391II |
| 16505 | sugar transporter | |||