Escherichia coli SQ88 |
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Putative Escherichia coli SQ88 RM systems
Ref: Quan,S. et al. unpublished
REBASE ref # 19614
Complete sequence: 4,610,881 bp
GenBank #: CP011321
REBASE acronym: EcoSQ88
Org_num: 15460
All begin SG49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4404 | toxic peptide regulated by antisense sRNA symR | |||
| 4406 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoSQ88ORF4407P |
| 4407 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoSQ88ORF4407P |
| ??? | R | Msa17ORFC2P (100% identity) | AACNNNNNNGTGC | EcoSQ88ORF4407P |
| ??? | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1996 | amino acid exporter for phenylalanine, | |||
| 1997 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoSQ88DcmP |
| 1998 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoSQ88DcmP |
| 1999 | HD superfamily phosphohydrolase | |||
| 3308 | global DNA-binding transcriptional dual | |||
| 3309 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoSQ88ORF3309P |
| 3310 | membrane protein | |||
| 3426 | D-ribulose-5-phosphate 3-epimerase | |||
| 3427 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSQ88DamP |
| 3428 | cell division protein that binds to the septal | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1165 | e14 prophage, site-specific DNA recombinase | |||
| 1166 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoSQ88ORF1166P |
| 1167 | isocitrate dehydrogenase | |||
| 4401 | pseudogene | |||
| 4402 | R | SenHNK130McrCP (100% identity) | EcoSQ88McrCP | |
| 4403 | R | SenHNK130McrBP (100% identity) | EcoSQ88McrBP | |
| 4404 | toxic peptide regulated by antisense sRNA symR | |||
| ??? | type I restriction enzyme EcoKI R protein | |||
| ??? | R | EcoZK126MrrP (100% identity) | EcoSQ88Mrr2P | |
| 4409 | methylated adenine and cytosine restriction | |||
| ??? | Mrr restriction system protein | |||
| 4409 | R | SenHNK130MrrP (100% identity) | EcoSQ88MrrP | |
| 4410 | metal-binding GTPase | |||