Escherichia coli SEC470 |
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Putative Escherichia coli SEC470 RM systems
Ref: Liu,G. et al. unpublished
REBASE ref # 19611
| Sequence length: | GenBank #: | |
| Chromosome: | 5,610,558 bp | CP013962 |
| Chromosome: | 5,153,435 bp | CP007594 |
REBASE acronym: Eco470
Org_num: 15455
All begin AWH59_, DP32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1035 | 293 aa hypothetical protein | |||
| 1040 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco470ORF1045P |
| 1045 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco470ORF1045P |
| 1050 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco470ORF1045P |
| 1055 | transposase | |||
| 12510 | 113 aa hypothetical protein | |||
| 12515 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.Eco470ORF12520P |
| 12520 | M | M.Ecocq9ORF4140P (100% identity) | TGANNNNNNNNTGCT | M.Eco470ORF12520P |
| 12525 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco470ORF12520P |
| 12530 | restriction endonuclease | |||
| 23890 | transcription factor | |||
| 23895 | M | M.EcoW14588ORF21505P (100% identity) | M.Eco470ORF23895P | |
| 23900 | S | S1.EcoUM1886ORF17525P (99% identity) | S.Eco470ORF23895P | |
| 23905 | 218 aa hypothetical protein | |||
| 23910 | Appr-1-p processing protein | |||
| 23915 | R | EcoS1720ORF13060P (100% identity) | Eco470ORF23895P | |
| 23920 | metal-dependent hydrolase | |||
| 25125 | transposase | |||
| 25130 | R | Kpnb12LORF3425P (100% identity) | Eco470ORF25140P | |
| 25135 | S | S.Kpnb12LORF3425P (100% identity) | S.Eco470ORF25140P | |
| 25140 | M | M.Kpnb12LORF3425P (100% identity) | M.Eco470ORF25140P | |
| 25145 | 50S ribosome-binding GTPase | |||
| Chromosome | ||||
| 10615 | metal-dependent hydrolase | |||
| 10620 | R | EcoM9ORF9685P (100% identity) | Eco470aORF10635P | |
| 10625 | 227 aa hypothetical protein | |||
| ??? | S | S.EcoM9ORF9685P (100% identity) | S.Eco470aORF10635P | |
| 10635 | M | M.EcoSTEC346ORFGP (100% identity) | M.Eco470aORF10635P | |
| 10640 | 388 aa hypothetical protein | |||
| 21270 | 563 aa hypothetical protein | |||
| 21275 | S | S.SflN116ORF3940P (100% identity) | S.Eco470aORF21280P | |
| 21280 | M | M.SflN116ORF3940P (100% identity) | M.Eco470aORF21280P | |
| 21285 | R | EcoETECORF3912P (100% identity) | Eco470aORF21280P | |
| 21290 | protein cII | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 645 | 202 aa hypothetical protein | |||
| 650 | M | M.YpsF1ORFBP (100% identity) | M.Eco470ORF650P | |
| 655 | 108 aa hypothetical protein | |||
| 3345 | 73 aa hypothetical protein | |||
| 3350 | M | M.StyR64ORFAP (100% identity) | M.Eco470ORF3350P | |
| 3355 | 103 aa hypothetical protein | |||
| 4775 | Fis family transcriptional regulator | |||
| 4780 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco470ORF4780P |
| 4785 | 59 aa hypothetical protein | |||
| 4890 | 73 aa hypothetical protein | |||
| 4895 | M | M.Ecocq9ORF29050P (100% identity) | M.Eco470ORF4895P | |
| 4900 | 132 aa hypothetical protein | |||
| 5580 | 73 aa hypothetical protein | |||
| 5585 | M | M.Ecocq9ORF29710P (100% identity) | M.Eco470ORF5585P | |
| 5590 | 68 aa hypothetical protein | |||
| 5730 | TrmB family transcriptional regulator | |||
| 5735 | M | M.Ecocq9ORF19465P (100% identity) | M.Eco470ORF5735P | |
| 5755 | Shiga toxin subunit A | |||
| 8425 | 277 aa hypothetical protein | |||
| ??? | M | M.YpsF1ORFDP (100% identity) | M.Eco470ORF8430P | |
| 8435 | DNA-binding protein | |||
| 12240 | nuclease | |||
| 12245 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco470ORF12245P |
| 12250 | 439 aa hypothetical protein | |||
| 21515 | ribulose phosphate epimerase | |||
| 21520 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco470DamP |
| 21525 | cell division protein DamX | |||
| 26065 | hydrolase | |||
| 26070 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.Eco470DcmP |
| 26075 | V | V.SflFF59DcmP (100% identity) | V.Eco470DcmP | |
| 26080 | multidrug DMT transporter | |||
| Chromosome | ||||
| 1500 | 162 aa hypothetical protein | |||
| 1505 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Eco470aORF23545P |
| 1510 | LexA family transcriptional regulator | |||
| 4425 | P21 prophage-derived protein NinB | |||
| 4430 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco470aORF4430P |
| 4435 | protein ninE | |||
| 6620 | TrmB family transcriptional regulator | |||
| 6625 | M | M.EcoETECORF1210P (100% identity) | M.Eco470aORF6625P | |
| 6645 | TciA | |||
| 11220 | multidrug DMT transporter | |||
| 11225 | V | V.SflSTLE3DcmP (100% identity) | V.Eco470aDcmP | |
| 11230 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco470aDcmP |
| 11235 | hydrolase | |||
| 15040 | nuclease | |||
| 15045 | M | M.EcoSTEC639ORF9630P (100% identity) | M.Eco470aORF15045P | |
| 15050 | 309 aa hypothetical protein | |||
| 19150 | Fis family transcriptional regulator | |||
| 19155 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco470aORF19155P |
| 19160 | 59 aa hypothetical protein | |||
| 19785 | ribulose-phosphate 3-epimerase | |||
| 19790 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco470aDamP |
| 19795 | cell division protein DamX | |||
| 24415 | 70 aa hypothetical protein | |||
| 24420 | RM | EcoETECORF4478P (100% identity) | CTGAAG | Eco470aORF24420P |
| 24425 | M | M.EcoETECORF4478P (100% identity) | CTGAAG | M.Eco470aORF24420P |
| 24430 | 62 aa hypothetical protein | |||
| 25665 | phage protein | |||
| 25670 | M | M.Sso63633ORF22290P (100% identity) | M.Eco470aORF25670P | |
| 25675 | holin | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | R | Ssp28760McrCP (100% identity) | Eco470McrCP | |
| 12505 | R | Ssp28760McrBP (100% identity) | Eco470McrBP | |
| 12510 | 113 aa hypothetical protein | |||
| 12525 | DEAD/DEAH box helicase | |||
| 12530 | R | Ssp28760MrrP (100% identity) | Eco470MrrP | |
| 12535 | GTP-binding protein | |||
| Chromosome | ||||
| 24400 | transposase | |||
| 24405 | R | EcoETECMcrBP (100% identity) | Eco470aMcrBP | |
| 24410 | R | EcoETECMcrCP (100% identity) | Eco470aMcrCP | |
| 24415 | 70 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14505 | transcriptional regulator | |||
| 14510 | M | M.SflFF34ORF8575P (100% identity) | GATC | M.Eco470aORF14510P |
| 14515 | serine/threonine protein phosphatase | |||
| 25620 | 162 aa hypothetical protein | |||
| 25625 | M | M.EcoETECORF4689P (100% identity) | GATC | M.Eco470aORF25625P |
| 25630 | LexA family transcriptional regulator | |||