Lyngbya confervoides BDU141951 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Lyngbya confervoides BDU141951 RM systems
Ref: Chandrababunaidu,M.M. et al. Genome Announc 3 (2) (2015)
REBASE ref # 19325
Contig set: 7,857,686 bp
GenBank #: JTHE00000000 (NZ_JTHE00000000)
REBASE acronym: Lco141951
Org_num: 15223
All begin QQ91_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1025 | 338 aa hypothetical protein | |||
| ??? | S | S.PxiKD52ORF28035P (55% identity) | S.Lco141951ORFAP | |
| 24255 | 142 aa hypothetical protein | |||
| 24260 | M | M.AmoBDHKMORF31350P (100% identity) | M.Lco141951ORF24260P | |
| 24265 | S | S.AmoBDHKMORF31350P (100% identity) | S.Lco141951ORF24260P | |
| 24270 | R | AmoBDHKMORF31350P (100% identity) | Lco141951ORF24260P | |
| 24275 | 241 aa hypothetical protein | |||
| 27565 | 114 aa hypothetical protein | |||
| 27570 | M | M.AmoBDHKMORF34655P (100% identity) | M.Lco141951ORF27570P | |
| 27575 | 146 aa hypothetical protein | |||
| 27580 | Appr-1-p processing protein | |||
| 27585 | 209 aa hypothetical protein | |||
| ??? | S | S.AmoBDHKMORF34655P (43% identity) | S1.Lco141951ORF27570P | |
| 27590 | S | 89 aa hypothetical protein | S2.Lco141951ORF27570P | |
| 27595 | transposase | |||
| 27600 | S | restriction modification system DNA specificity domain protein | S3.Lco141951ORF27570P | |
| 27605 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35895 | 98 aa hypothetical protein | |||
| 35900 | R | AspR891ORF5040P (57% identity) | GATC | Lco141951ORF35900P |
| 35905 | ABC transporter ATP-binding protein | |||
| 9260 | 205 aa hypothetical protein | |||
| 9265 | M | M.OanW13P3ORFAP (58% identity) | CCWGG | M.Lco141951ORF9265P |
| 9270 | 205 aa hypothetical protein | |||
| 4355 | pseudogene | |||
| 4360 | M | M.Ber401ORF4609P (68% identity) | M.Lco141951ORF4360P | |
| 4365 | membrane protein | |||
| 5570 | 490 aa hypothetical protein | |||
| 5575 | M | M.AmoBDHKMORF8730P (85% identity) | M.Lco141951ORF5575P | |
| 5580 | 1199 aa hypothetical protein | |||
| 11945 | 752 aa hypothetical protein | |||
| 11950 | M | M.AmoBDHKMORF18815P (100% identity) | TTTAAA | M.Lco141951ORF11950P |
| 11955 | 137 aa hypothetical protein | |||
| 12680 | permease | |||
| 12685 | M | Type I restriction-modification system methyltransferase subunit | M.Lco141951ORF12685P | |
| 12690 | transcriptional regulator | |||
| 18390 | 76 aa hypothetical protein | |||
| 18395 | M | M.AmoBDHKMORF25440P (100% identity) | CGATCG | M.Lco141951ORF18395P |
| 18400 | 4-hydroxy-3-methylbut-2-enyl diphosphate | |||
| 18850 | pentapeptide repeat protein | |||
| 18855 | RM | AmoBDHKMORF25900P (100% identity) | Lco141951ORF18855P | |
| 18860 | GIY-YIG catalytic domain protein | |||
| 21830 | 75 aa hypothetical protein, partial | |||
| 21835 | M | M.AmoBDHKMORF28910P (100% identity) | GATC | M.Lco141951ORF21835P |
| 21840 | 67 aa hypothetical protein | |||
| 24240 | 218 aa hypothetical protein | |||
| 24245 | M | M.AmoBDHKMORF31330P (100% identity) | GATC | M.Lco141951ORF24245P |
| 24250 | 285 aa hypothetical protein | |||
| 25440 | membrane protein | |||
| 25445 | M | 620 aa hypothetical protein | M.Lco141951ORF25445P | |
| 25450 | arginine biosynthesis protein ArgJ | |||
| 27440 | 338 aa hypothetical protein | |||
| 27445 | M | M.AmoBDHKMORF34540P (100% identity) | M.Lco141951ORF27445P | |
| 27450 | transposase | |||
| 27455 | S | S.AmoBDHKMORF34540P (100% identity) | S.Lco141951ORF27445P | |
| 27460 | 1385 aa hypothetical protein | |||
| 30030 | 78 aa hypothetical protein | |||
| 30035 | RM | AmoBDHKMORF37095P (100% identity) | Lco141951ORF30035P | |
| 30040 | 1335 aa hypothetical protein | |||
| 30035 | 1334 aa hypothetical protein | |||
| 30040 | RM | AmoBDHKMORF37100P (100% identity) | Lco141951ORF30040P | |
| 30045 | ATP-dependent helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4335 | 94 aa hypothetical protein | |||
| 4345 | R | PgaP129MrrP (62% identity) | Lco141951Mrr2P | |
| 4350 | 172 aa hypothetical protein | |||
| 5215 | 200 aa hypothetical protein | |||
| 5220 | R | AmoBDHKMMrrP (100% identity) | Lco141951Mrr3P | |
| 5225 | 61 aa hypothetical protein | |||
| 28075 | glutathione S-transferase | |||
| 28080 | R | AmoBDHKMMrr2P (100% identity) | Lco141951MrrP | |
| 28085 | oxidoreductase | |||