Escherichia coli SCB12 |
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Putative Escherichia coli SCB12 RM systems
Ref: Chavez-Bueno,S. et al. unpublished
REBASE ref # 19172
Contig set: 5,478,295 bp
GenBank #: JMQO00000000 (NZ_JMQO00000000)
REBASE acronym: EcoSCB12
Org_num: 15175
All begin EP21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12640 | endoribonuclease SymE | |||
| 12645 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoSCB12ORF12650P |
| 12650 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoSCB12ORF12650P |
| 12655 | R | EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | EcoSCB12ORF12650P |
| 12660 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21150 | M | 152 aa hypothetical protein | M.EcoSCB12ORF21150P | |
| 21155 | holin | |||
| 23295 | M | M.Ecos142ORF20090P (70% identity) | M.EcoSCB12ORF23295P | |
| 23300 | 67 aa hypothetical protein | |||
| 23330 | LexA family transcriptional regulator | |||
| 23335 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoSCB12ORF23335P |
| 23340 | 162 aa hypothetical protein | |||
| 23430 | 73 aa hypothetical protein | |||
| 23435 | M | M.SflFF3ORF25360P (100% identity) | M.EcoSCB12ORF23435P | |
| 23440 | 308 aa hypothetical protein | |||
| 23110 | 73 aa hypothetical protein | |||
| 23115 | M | M.SflN92ORF24820P (100% identity) | M.EcoSCB12ORF23115P | |
| 23120 | pseudogene | |||
| 14785 | 73 aa hypothetical protein | |||
| 14790 | M | M.Sfl0030ORFCP (100% identity) | M.EcoSCB12ORF14790P | |
| 14795 | 308 aa hypothetical protein | |||
| 23045 | 65 aa hypothetical protein | |||
| 23050 | M | DNA adenine methylase | M.EcoSCB12ORF23050P | |
| 21380 | holin | |||
| 21385 | M | 152 aa hypothetical protein | M.EcoSCB12ORF21385P | |
| 15160 | TciA | |||
| 15180 | M | M.Ecos131ORF21080P (100% identity) | M.EcoSCB12ORF15180P | |
| 15185 | DNA recombinase | |||
| 17520 | ATPase | |||
| 17525 | M | M.EcosS3ORF15775P (100% identity) | M.EcoSCB12ORF17525P | |
| 17530 | 118 aa hypothetical protein | |||
| 17255 | 146 aa hypothetical protein | |||
| ??? | M | M.EcoleORFAP (100% identity) | GATC | M.EcoSCB12ORFAP |
| 17265 | protein ninE | |||
| 10355 | ribulose-phosphate 3-epimerase | |||
| 10360 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCB12DamP |
| 10365 | cell division protein DamX | |||
| 2670 | hydrolase | |||
| 2675 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoSCB12DcmP |
| 2680 | V | V.SflC32DcmP (74% identity) | V.EcoSCB12DcmP | |
| 2685 | multidrug DMT transporter | |||
| 8255 | 162 aa hypothetical protein | |||
| 8260 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoSCB12ORF8260P |
| 8265 | LexA family transcriptional regulator | |||
| 7685 | 64 aa hypothetical protein | |||
| 7690 | M | M.Esp911AORF3194P (100% identity) | GATC | M.EcoSCB12ORF7690P |
| 7695 | transcriptional regulator | |||
| 6025 | 65 aa hypothetical protein | |||
| 6030 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSCB12ORF6030P |
| 6050 | 75 aa hypothetical protein | |||
| 26435 | Fis family transcriptional regulator | |||
| 26440 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCB12ORF26440P |
| 26445 | 59 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12655 | DEAD/DEAH box helicase | |||
| 12660 | R | EcosS1MrrP (100% identity) | EcoSCB12MrrP | |
| 12665 | GTP-binding protein | |||
| 8450 | tail fiber protein | |||
| 8455 | R | EspFAAGmrSDP (100% identity) | EcoSCB12GmrSDP | |
| 8460 | damage-inducible protein DinI | |||