Vibrio cholerae O1 biovar El Tor FJ147 |
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Putative Vibrio cholerae O1 biovar El Tor FJ147 RM systems
Ref: Didelot,X. et al. PLoS Genet. 11 (3), E1005072 (2015)
REBASE ref # 19419
| Sequence length: | GenBank #: | |
| chromosome I: | 3,045,476 bp | CP009042 |
| chromosome II: | 1,046,459 bp | CP009041 |
REBASE acronym: Vch147
Org_num: 15316
All begin IR04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 14005 | membrane protein | |||
| 14010 | R | VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | Vch147ORF14030P |
| 14015 | 663 aa hypothetical protein | |||
| 14020 | 470 aa hypothetical protein | |||
| 14025 | S | S.VspNIH41ORF1746P (99% identity) | AAGNNNNNNCATC | S.Vch147ORF14030P |
| 14030 | M | M.VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | M.Vch147ORF14030P |
| 14035 | 687 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 8395 | 1151 aa hypothetical protein | |||
| 8400 | RM | VchPC1ORF10795P (100% identity) | Vch147ORF8400P | |
| 8405 | alkaline phosphatase | |||
| 18205 | ribulose-phosphate 3-epimerase | |||
| 18210 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch147DamP |
| 18215 | cell division protein DamX | |||
| chromosome II | ||||
| 880 | guanosine 5-monophosphate oxidoreductase | |||
| ??? | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.Vch147ORF885P |
| 890 | 638 aa hypothetical protein | |||
| 1815 | hemagglutinin | |||
| 1820 | M | M.VspNIH41ORF3529P (94% identity) | M.Vch147ORF1820P | |
| 1825 | 141 aa hypothetical protein | |||