Escherichia coli NCTC9001 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC9001 RM systems
Ref: Informatics,Pathogen. unpublished
REBASE ref # 22501
| Sequence length: | GenBank #: | |
| Chromosome: | (contig set) | CAADIS000000000 |
| plasmid 3: | 776,856 bp | LN831042 |
| plasmid 4: | 1,001,376 bp | LN831043 |
| plasmid 5: | 1,078,911 bp | LN831044 |
| plasmid 6: | 1,154,146 bp | LN831045 |
REBASE acronym: Eco9001
Org_num: 13808
All begin ERS451419_, NCTC9001_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5106 | protein YjiS | |||
| 5108 | R | SflSTLE3ORF19325P (100% identity) | Eco9001ORF5110P | |
| 5109 | type I restriction-modification system | |||
| 5110 | M | M.SflSTLE3ORF19325P (96% identity) | M.Eco9001ORF5110P | |
| 5111 | restriction endonuclease | |||
| plasmid 4 | ||||
| 2188 | protein YjiS | |||
| ??? | R | EcoS88ORF4968P (100% identity) | AGCANNNNNNTGA | Eco9001IP |
| 2191 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.Eco9001I |
| 2192 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.Eco9001I |
| 2193 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4159 | DamX protein | |||
| ??? | M | M.EcoSCU479DamP (96% identity) | GATC | M.Eco9001DamP |
| 4161 | ribulose-phosphate 3-epimerase | |||
| 2502 | phosphohydrolase | |||
| ??? | M | M.EcoC9098DcmP (99% identity) | CCWGG | M.Eco9001Dcm2P |
| ??? | V | V.SflTDcmP (74% identity) | V.Eco9001Dcm2P | |
| 2507 | DMT superfamily transporter inner | |||
| 3402 | DNA methylase | |||
| ??? | M | M.SboBSORF1444P (81% identity) | M.Eco9001ORF3403P | |
| 3405 | lipoprotein | |||
| plasmid 3 | ||||
| 855 | LexA repressor | |||
| 856 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.Eco9001ORF856P |
| 857 | CPS-53 (KpLE1) prophage protein | |||
| plasmid 4 | ||||
| 2473 | membrane protein | |||
| 2474 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco9001ORF2474P |
| 2475 | DNA-binding protein Fis | |||
| plasmid 5 | ||||
| 3569 | lipoprotein | |||
| 3570 | M | M.SboBSORF1444P (100% identity) | M.Eco9001ORF3570P | |
| 3576 | phage protein YjhS encoded within prophage | |||
| plasmid 6 | ||||
| 4216 | DMT superfamily transporter inner | |||
| 4217 | V | V.SflC32DcmP (74% identity) | V.Eco9001DcmP | |
| 4218 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco9001Dcm |
| 4219 | phosphohydrolase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 921 | protein ninx | |||
| 922 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco9001ORF3402P |
| 923 | recombination protein ninB from phage origin | |||
| plasmid 5 | ||||
| 3401 | recombination protein ninB from phage origin | |||
| 3402 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco9001ORF3402P |
| 3403 | protein ninx | |||