Geminocystis species NIES-3708 |
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Putative Geminocystis species NIES-3708 RM systems
Ref: Hirose,Y. unpublished
REBASE ref # 19698
| Sequence length: | GenBank #: | |
| Chromosome: | 3,883,409 bp | AP014815 |
| plasmid pGM01: | 60,790 bp | AP014816 |
| plasmid pGM02: | 57,874 bp | AP014817 |
| plasmid pGM04: | 16,994 bp | AP014819 |
REBASE acronym: Gsp3708
Org_num: 15137
All begin GM3708_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 786 | 608 aa hypothetical protein | |||
| 787 | R | Cap1201ORF3045P (81% identity) | Gsp3708ORF789P | |
| 788 | 155 aa hypothetical protein | |||
| 789 | M | M.Cap1201ORF3045P (91% identity) | M.Gsp3708ORF789P | |
| 790 | 58 aa hypothetical protein | |||
| 791 | protein of unknown function UPF0150 | |||
| 792 | S | S.MspMAB1ORF2047P (34% identity) | S.Gsp3708ORF789P | |
| 793 | prophage protein | |||
| 1310 | 120 aa hypothetical protein | |||
| 1311 | S | type I restriction-modification system | S1.Gsp3708ORF1312P | |
| 1312 | M | type I restriction-modification system | M.Gsp3708ORF1312P | |
| 1313 | 53 aa hypothetical protein | |||
| 1314 | 87 aa hypothetical protein | |||
| 1315 | 151 aa hypothetical protein | |||
| 1316 | 107 aa hypothetical protein | |||
| 1317 | 72 aa hypothetical protein | |||
| 1318 | 139 aa hypothetical protein | |||
| 1319 | S | S.GloSZORF2201P (31% identity) | S2.Gsp3708ORF1312P | |
| 1320 | S | type I restriction-modification system | S3.Gsp3708ORF1312P | |
| 1321 | 63 aa hypothetical protein | |||
| 1322 | 205 aa hypothetical protein | |||
| 1323 | mobile element protein | |||
| 1324 | mobile element protein | |||
| 1325 | 44 aa hypothetical protein | |||
| 1326 | 47 aa hypothetical protein | |||
| 1327 | 332 aa hypothetical protein | |||
| 1328 | R | Gsp3709ORF3728P (74% identity) | Gsp3708ORF1312P | |
| 1329 | 46 aa hypothetical protein | |||
| 1547 | 157 aa hypothetical protein | |||
| 1548 | M | M.Gsp3708ORF3586P (35% identity) | M.Gsp3708ORF1548P | |
| 1549 | 61 aa hypothetical protein | |||
| 2323 | 147 aa hypothetical protein | |||
| 2324 | S | S.Cap1201ORF15275P (55% identity) | S.Gsp3708ORF2327P | |
| 2325 | 84 aa hypothetical protein | |||
| 2326 | 87 aa hypothetical protein | |||
| 2327 | M | M.Cap1201ORF15275P (77% identity) | M.Gsp3708ORF2327P | |
| 2328 | type I restriction-modification system | |||
| ??? | R | Cap1201ORF15275P (96% identity) | Gsp3708ORF2327P | |
| 2331 | possible Transcriptional regulator | |||
| 3308 | 171 aa hypothetical protein | |||
| ??? | M | M.Cspa4ORF15390P (87% identity) | M.Gsp3708ORF3309P | |
| 3311 | 62 aa hypothetical protein | |||
| 3312 | MloA | |||
| 3313 | S | S.GthORF3272P (19% identity) | S.Gsp3708ORF3309P | |
| 3314 | 148 aa hypothetical protein | |||
| 3315 | 78 aa hypothetical protein | |||
| 3316 | R | Gsp3709ORF1375P (95% identity) | Gsp3708ORF3309P | |
| 3317 | 73 aa hypothetical protein | |||
| plasmid pGM02 | ||||
| 3585 | 56 aa hypothetical protein | |||
| 3586 | M | M.Gsp3708ORF1548P (35% identity) | M.Gsp3708ORF3586P | |
| 3587 | 37 aa hypothetical protein | |||
| 3607 | choloylglycine hydrolase | |||
| 3608 | M | M.BicMT13ORF3265P (72% identity) | M.Gsp3708ORF3608P | |
| 3609 | S | S.SplZORFCP (43% identity) | S.Gsp3708ORF3608P | |
| 3610 | 69 aa hypothetical protein | |||
| 3611 | 135 aa hypothetical protein | |||
| 3612 | helix-turn-helix motif | |||
| 3613 | 60 aa hypothetical protein | |||
| 3614 | 144 aa hypothetical protein | |||
| 3615 | R | Afl81ORFG1P (66% identity) | Gsp3708ORF3608P | |
| 3564 | mobile element protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 99 | LSU ribosomal protein L7/L12 | |||
| 100 | RM | Cap3221ORF10600P (64% identity) | Gsp3708ORF100P | |
| 101 | protein of unknown function DUF393 | |||
| 108 | carbohydrate kinase | |||
| 109 | R | Cspa4ORF540P (84% identity) | Gsp3708ORF110P | |
| 110 | M | M.Cspa4ORF540P (91% identity) | GGNCC | M.Gsp3708ORF110P |
| 111 | light-dependent protochlorophyllide reductase | |||
| 768 | 257 aa hypothetical protein | |||
| 769 | M | M.Cspa4ORF3260P (85% identity) | CCWGG | M.Gsp3708ORF769P |
| 770 | GMP synthase [glutamine-hydrolyzing] | |||
| 776 | coproporphyrinogen III oxidase | |||
| 777 | RM | M.NspMS1ORF14490P (43% identity) | Gsp3708ORF777P | |
| 778 | 93 aa hypothetical protein | |||
| 1215 | 264 aa hypothetical protein | |||
| 1216 | RM | CspCCYORF7564P (66% identity) | Gsp3708ORF1216P | |
| 1217 | Tn7-like transposition protein D | |||
| 1271 | photosystem I subunit XI PsaL | |||
| ??? | M | M.CspB1200ORF11790P (84% identity) | TCTAGA | M.Gsp3708ORF1272P |
| 1274 | TRAP dicarboxylate transporter | |||
| 1437 | guanine deaminase | |||
| ??? | M | DNA methylase N-4/N-6 domain-containing protein | TCTAGA | M.Gsp3708ORF1438P |
| ??? | R | Gsp3709ORF2272P (78% identity) | TCTAGA | Gsp3708ORF1438P |
| 1442 | 69 aa hypothetical protein | |||
| 1527 | 75 aa hypothetical protein | |||
| 1528 | M | M.Cap3222ORF11975P (91% identity) | GCGC | M.Gsp3708ORF1528P |
| 1529 | 59 aa hypothetical protein | |||
| 1565 | 71 aa hypothetical protein | |||
| 1566 | M | M.Cap3222ORF11975P (94% identity) | GCGC | M.Gsp3708ORF1566P |
| 1567 | 81 aa hypothetical protein | |||
| 1666 | glycolate dehydrogenase | |||
| 1667 | RM | Cspa4ORF14215P (66% identity) | Gsp3708ORF1667P | |
| 1668 | 128 aa hypothetical protein | |||
| 1816 | 55 aa hypothetical protein | |||
| 1817 | RM | Cap1201ORF11640P (79% identity) | Gsp3708ORF1817P | |
| 1818 | CAB/ELIP/HLIP family protein | |||
| 2268 | 41 aa hypothetical protein | |||
| 2269 | M | M.CstHL69ORFHP (70% identity) | GATC | M.Gsp3708ORF2269P |
| 2270 | 176 aa hypothetical protein | |||
| 3318 | transcription-repair coupling factor | |||
| ??? | M | M.Gsp3709ORF3391P (33% identity) | CGATCG | M.Gsp3708ORF3319P |
| 3320 | modification methylase DsaV | |||
| ??? | DNA methyltransferase | |||
| 3320 | M | M.Gsp3708ORF3319P (32% identity) | GDGCHC | M.Gsp3708ORF3320P |
| 3322 | phosphopantothenoylcysteine decarboxylase | |||
| 3340 | type I restriction-modification system | |||
| 3341 | M | M.CspB1200ORF2935P (85% identity) | CCCGC | M1.Gsp3708ORF3341P |
| 3342 | R | CstHL69ORFNP (77% identity) | Gsp3708ORF3341P | |
| 3343 | M | M1.CstHL69ORFNP (82% identity) | CCCGC | M2.Gsp3708ORF3341P |
| 3344 | 38 aa hypothetical protein | |||
| plasmid pGM01 | ||||
| 3550 | 133 aa hypothetical protein | |||
| 3551 | M | M.CspB1200ORF13300P (77% identity) | M.Gsp3708ORF3551P | |
| 3552 | 72 aa hypothetical protein | |||
| plasmid pGM02 | ||||
| 3591 | 103 aa hypothetical protein | |||
| 3592 | M | M.Ssp7117ORF15040P (56% identity) | M.Gsp3708ORF3592P | |
| 3593 | 81 aa hypothetical protein | |||
| plasmid pGM04 | ||||
| 3631 | tyrosine recombinase XerC | |||
| 3632 | RM | CspB1200ORF440P (57% identity) | Gsp3708ORF3632P | |
| 3633 | MloA protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2069 | 515 aa hypothetical protein | |||
| 2070 | R | restriction enzyme LlaI protein | Gsp3708McrBP | |
| 2071 | 212 aa hypothetical protein | |||