Helicobacter pylori ML3 |
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Putative Helicobacter pylori ML3 RM systems
Ref: Wang,H.-C. et al. unpublished
REBASE ref # 19579
Complete sequence: 1,629,114 bp
GenBank #: AP014712
REBASE acronym: HpyML3
Org_num: 15090
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpySG38ORF2940P (90% identity) | M.HpyML3ORFZP | |
| ??? | S | S.HpyML3ORFXP (97% identity) | S.HpyML3ORFZP | |
| ??? | R | HpyK007ORF2555P (97% identity) | HpyML3ORFZP | |
| ??? | S | S.HpyML3ORFZP (97% identity) | S.HpyML3ORFXP | |
| ??? | R | HpyG272ORF5090P (57% identity) | HpyML3ORFF1P | |
| ??? | R | HpySG12ORF2260P (36% identity) | HpyML3ORFQP | |
| ??? | M | M.Hpyfe48ORF4915P (89% identity) | M.HpyML3ORFQP | |
| ??? | S | S.HpyLIM7XI (98% identity) | S.HpyML3ORFQP | |
| ??? | R | HpyOK13ORFIP (91% identity) | HpyML3ORFGP | |
| ??? | M | M.HpyMA20VIII (96% identity) | M.HpyML3ORFGP | |
| ??? | S | S.HpyCHN7V (56% identity) | S1.HpyML3ORFGP | |
| ??? | S | type I restriction endonuclease subunit S | S2.HpyML3ORFGP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | 93 aa hypothetical protein N205_06855 | CATG | HpyML3ORFE1P |
| ??? | M | M.HpyK110I (98% identity) | CATG | M.HpyML3ORFE1P |
| ??? | R | HpyOK304ORFA1P (100% identity) | TCNGA | HpyML3ORFD1P |
| ??? | M | M.HpyOK304ORFA1P (99% identity) | TCNGA | M.HpyML3ORFD1P |
| ??? | M | M.Hpyfe4ORF1870P (96% identity) | GCGC | M.HpyML3ORFC1P |
| ??? | R | Hpyfe93ORF2050P (98% identity) | TCNNGA | HpyML3ORFB1P |
| ??? | M | M.Hpyfe78ORF4965P (98% identity) | TCNNGA | M.HpyML3ORFB1P |
| ??? | M | M.HpyQ56ORFMP (98% identity) | GTNNAC | M.HpyML3ORFA1P |
| ??? | R | HpyOK304ORFXP (94% identity) | GTNNAC | HpyML3ORFA1P |
| ??? | RM | Hpy1136ORFVP (59% identity) | HpyML3ORFWBP | |
| ??? | RM | Hpyfe102ORF4025P (56% identity) | HpyML3ORFWAP | |
| ??? | R | HpyS64ORFWP (48% identity) | GTAC | HpyML3ORFVP |
| ??? | M | M.HpyTW06ORF2415P (59% identity) | GTAC | M.HpyML3ORFVP |
| ??? | R | HpySG12ORF2360P (98% identity) | ACGT | HpyML3ORFRP |
| ??? | M | M.HpySG18ORF4970P (99% identity) | ACGT | M.HpyML3ORFRP |
| ??? | 207 aa hypothetical protein | |||
| ??? | type II DNA modification enzyme | |||
| ??? | R | Hpyfe89ORF5085P (99% identity) | ACNGT | HpyML3ORFSP |
| ??? | M | M.HpyV002II (100% identity) | ACNGT | M.HpyML3ORFSP |
| ??? | DD-heptosyltransferase | |||
| ??? | DD-heptosyltransferase | |||
| ??? | M | M.Hpyfe55ORF4815P (98% identity) | ATTAAT | M.HpyML3ORFTP |
| ??? | M | M.Hpyfe73ORF5705P (74% identity) | CTNAG | M.HpyML3ORFPP |
| ??? | R | Hpy83ORF369P (72% identity) | CTNAG | HpyML3ORFPP |
| ??? | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.HpyML3ORFOP |
| ??? | R | HpyP009IVP (96% identity) | CCGG | HpyML3ORFOP |
| ??? | M | M.Hpy155ORF1940P (98% identity) | GATC | M.HpyML3ORFNP |
| ??? | R | HpyK007IIP (81% identity) | GATC | HpyML3ORFNP |
| ??? | R | HpyM5CORFPP (96% identity) | CCTC | HpyML3ORFMP |
| ??? | DNA methyltransferase | |||
| ??? | M | M2.HpyK101VIIIP (99% identity) | CCTC | M2.HpyML3ORFMP |
| ??? | R | HpyMA10VP (99% identity) | GANTC | HpyML3ORFLP |
| ??? | M | M.Hpyfe99ORF7240P (100% identity) | GANTC | M.HpyML3ORFLP |
| ??? | R | Hpy1681ORFFP (98% identity) | GAAGA | HpyML3ORFIP |
| ??? | M | modification methylase | GAAGA | M1.HpyML3ORFIP |
| ??? | M | M2.HpyMA17V (95% identity) | GAAGA | M2.HpyML3ORFIP |
| ??? | restriction endonuclease subunit M, partial | |||
| ??? | R | HpyCHN3XP (98% identity) | TGCA | HpyML3ORFHP |
| ??? | M | M.HpyMA06V (100% identity) | TGCA | M.HpyML3ORFHP |
| ??? | RM | HpyCHN7ORF7165P (89% identity) | HpyML3ORFEP | |
| ??? | RM | HpyTW10ORF7020P (61% identity) | HpyML3ORFCAP | |
| ??? | RM | SAM-dependent methyltransferase | HpyML3ORFCBP | |
| ??? | S | S1.HpyK004ORF6870P (98% identity) | S1.HpyML3ORFCP | |
| ??? | S | S.HpyT029ORF6910P (44% identity) | S2.HpyML3ORFCP | |
| ??? | R | HpyTW03VIIP (88% identity) | GAATTC | HpyML3ORFBP |
| ??? | M | M.HpyV001VI (100% identity) | GAATTC | M.HpyML3ORFBP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | Hpyfe122ORF630P (95% identity) | HpyML3ORFAP | |
| ??? | M | M.HpyU425ORF6595P (97% identity) | M.HpyML3ORFAP | |
| ??? | 274 aa hypothetical protein | |||
| ??? | M | M.HpyOK88ORFNP (56% identity) | M1.HpyML3ORFJP | |
| ??? | M | adenine-specific DNA methylase | M2.HpyML3ORFJP | |
| ??? | R | Hpyfe79ORF7170P (95% identity) | HpyML3ORFJP | |
| ??? | M | M.HpyH137ORF40P (97% identity) | M.HpyML3ORFDP | |
| ??? | R | HpySG19ORF7240P (97% identity) | HpyML3ORFDP | |