Propionibacterium freudenreichii subsp. freudenreichii DSM 20271 |
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Putative Propionibacterium freudenreichii subsp. freudenreichii DSM 20271 RM systems
Ref: Koskinen,P. et al. unpublished
REBASE ref # 20910
Complete sequence: 2,649,166 bp
GenBank #: CP010341
REBASE acronym: Pfr20271
Org_num: 15113
All begin RM25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 131 | 215 aa Hypothetical protein | |||
| 132 | R | PfrIH1ORFCP (100% identity) | GGANNNNNNNCTT | Pfr20271IP |
| 133 | S | S.PfrIH19ORFBP (100% identity) | GGANNNNNNNCTT | S.Pfr20271I |
| 134 | M | M.Pfr121ORF6765P (100% identity) | GGANNNNNNNCTT | M.Pfr20271I |
| 135 | ABC-type transport system ATP-binding | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 315 | 91 aa Hypothetical protein | |||
| 316 | RM | PfrIH19ORFGP (100% identity) | Pfr20271ORF316AP | |
| 317 | IS3 family element | |||
| 318 | Transposase IS6110 | |||
| 319 | RM | PfrIH19ORFFP (100% identity) | Pfr20271ORF316BP | |
| 320 | HipA domain protein | |||
| 2004 | Transposase IS204/IS1001/IS1096/IS1165 family | |||
| 2005 | M | M.PfrP14ORF3785P (100% identity) | TCGWCGA | M.Pfr20271II |
| 2006 | 5-methylcytosine restriction system | |||
| 2163 | 111 aa Hypothetical protein | |||
| 2164 | R | PfrUF1ORFAP (100% identity) | C | Pfr20271ORF2164P |
| 2165 | Transposase IS204/IS1001/IS1096/IS1165 family | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1601 | IS1096, TnpA family protein | |||
| 1602 | R | PfrIH19ORFDP (100% identity) | Pfr20271ORF1603P | |
| 1603 | M | M.PfrIH1ORFBBP (100% identity) | M.Pfr20271ORF1603BP | |
| 1604 | Transposase IS204/IS1001/IS1096/IS1165 family | |||
| 1605 | M | M.PfrIH17ORFHP (100% identity) | M.Pfr20271ORF1603AP | |
| 1606 | 308 aa Hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 290 | insertion element ISCmi2 transposase | |||
| ??? | R | PfrUF1Mrr2P (100% identity) | Pfr20271MrrP | |
| 292 | Protein of hypothetical function DUF299 | |||
| 330 | 79 aa Hypothetical protein | |||
| 331 | R | PfrJS4ORF1633P (100% identity) | Pfr20271ORF331P | |
| 332 | insertion element ISCmi2 transposase | |||
| 2005 | Modification methylase Cfr9I | |||
| 2006 | R | PfrTL19McrCP (100% identity) | Pfr20271McrCP | |
| 2007 | R | PfrP14McrBP (99% identity) | Pfr20271McrBP | |
| 2008 | 241 aa Hypothetical protein | |||