Helicobacter pylori 1152/04 |
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Putative Helicobacter pylori 1152/04 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,588,506 bp
GenBank #: JSUZ00000000 (NZ_JSUZ00000000)
REBASE acronym: Hpy1198
Org_num: 15047
All begin HPY1152_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4450 | R | Hpy1089ORF4605P (80% identity) | Hpy1198ORF4455P | |
| 4455 | M | M.Hpy1089ORF4605P (100% identity) | M.Hpy1198ORF4455P | |
| 4460 | S | S.Hpy1089ORF4605P (100% identity) | S.Hpy1198ORF4455P | |
| 4470 | polyphosphate kinase | |||
| 960 | LPP20 lipofamily protein | |||
| 965 | S | S.Hpy1089ORF6100P (100% identity) | S1.Hpy1198ORF1010P | |
| 970 | formyltetrahydrofolate deformylase | |||
| 975 | endopeptidase IV | |||
| 980 | 86 aa hypothetical protein | |||
| 985 | TIR domain protein | |||
| 990 | lipoprotein | |||
| 995 | 145 aa hypothetical protein | |||
| 1000 | S | 155 aa hypothetical protein | S2.Hpy1198ORF1010P | |
| 1005 | CAAX protease | |||
| 1010 | M | M.Hpy1089ORF4870P (100% identity) | M.Hpy1198ORF1010P | |
| 1015 | R | Hpy1089ORF4870P (100% identity) | Hpy1198ORF1010P | |
| 1020 | metal-dependent hydrolase | |||
| 1965 | hydroxyethylthiazole kinase | |||
| 1970 | R | Hpy1089ORF1800P (100% identity) | Hpy1198ORF1980P | |
| 1975 | S | S.Hpy1089ORF1800P (100% identity) | S.Hpy1198ORF1980P | |
| 1980 | M | M.Hpy1089ORF1800P (100% identity) | M.Hpy1198ORF1980P | |
| 1985 | membrane protein | |||
| 3890 | 104 aa hypothetical protein, partial | |||
| 3895 | S | S.Hpy1089ORF5695P (100% identity) | S.Hpy1198ORF3895P | |
| 3900 | cadmium transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | 135 aa hypothetical protein | CCGG | Hpy1198ORF5505P |
| 5505 | M | M.Hpy1089ORF630P (100% identity) | CCGG | M.Hpy1198ORF5505P |
| 5510 | pseudogene | |||
| 6120 | pseudogene | |||
| 6125 | M | M.Hpy1089ORF2505P (100% identity) | TCGA | M.Hpy1198ORF6125P |
| 6130 | pseudogene | |||
| 5305 | 144 aa hypothetical protein | |||
| 5310 | M | M.Hpy1089ORF5375P (100% identity) | GCGC | M.Hpy1198ORF5310P |
| 5315 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 50 | glycosyltransferase 9 family protein | |||
| 55 | M | M.Hpy1089ORF4730P (100% identity) | ATTAAT | M.Hpy1198ORF55P |
| 4750 | osmoprotection protein | |||
| 4755 | M | M.Hpy380ORF1160P (100% identity) | CGWCG | M.Hpy1198ORF4755P |
| 4760 | R | HpySP507IVP (100% identity) | CGWCG | Hpy1198ORF4755P |
| 4765 | osmoprotection binding protein | |||
| 5805 | 59 aa hypothetical protein | |||
| 5810 | M | M.Hpy1089ORF4815P (100% identity) | ACNGT | M.Hpy1198ORF5810P |
| 5815 | R | Hpy1089ORF4815P (100% identity) | ACNGT | Hpy1198ORF5810P |
| 5820 | restriction endonuclease | |||
| 5815 | pseudogene | |||
| 5820 | M | M.Hpy1089ORF4825P (100% identity) | ACGT | M.Hpy1198ORF5820P |
| 5825 | catalase | |||
| 7410 | DNA gyrase subunit B | |||
| 7415 | M | M.Hpy1089ORF7110P (100% identity) | GTAC | M.Hpy1198ORF7415P |
| 7420 | R | Hpy1089ORF7110P (100% identity) | GTAC | Hpy1198ORF7415P |
| 7425 | membrane protein | |||
| 4575 | flagellar hook protein FlgE | |||
| 4580 | R | Hpy1089ORF5785P (100% identity) | GTNNAC | Hpy1198ORF4585P |
| 4585 | M | M.Hpy1089ORF5785P (100% identity) | GTNNAC | M.Hpy1198ORF4585P |
| 4590 | ATP-dependent DNA helicase | |||
| 310 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyH027ORF3280P (55% identity) | Hpy1198ORF315AP | |
| ??? | RM | Hpy1089ORF2175CP (100% identity) | Hpy1198ORF315BP | |
| 325 | membrane protein | |||
| 4290 | Laminin subunit alpha-2 precursor | |||
| 4295 | R | HpyC113IIP (100% identity) | TCNNGA | Hpy1198ORF4300P |
| 4300 | M | M.Hpy1089ORF5285P (100% identity) | TCNNGA | M.Hpy1198ORF4300P |
| 4305 | acetyl-CoA carboxylase | |||
| 6475 | DEAD/DEAH box helicase | |||
| 6480 | RM | Hpy1089ORF7435P (100% identity) | Hpy1198ORF6480P | |
| 6485 | 30 aa hypothetical protein | |||
| 2355 | nicotinate-nucleotide pyrophosphorylase | |||
| 2360 | RM | Hpy1089ORF4155P (100% identity) | Hpy1198ORF2360P | |
| 2365 | peptidase S41 | |||
| 3085 | hydrolase | |||
| 3090 | M | M.Hpy1089ORF200P (100% identity) | CATG | M.Hpy1198ORF3090P |
| 3095 | 59 aa hypothetical protein | |||
| 2580 | N-acetylneuraminate synthase | |||
| 2585 | R | Hpy1089ORF3080P (100% identity) | Hpy1198ORF2585P | |
| 2590 | pseudogene | |||
| 6560 | membrane protein | |||
| 6565 | R | Hpy1089ORF7535P (100% identity) | CCATC | Hpy1198ORF6580P |
| 6570 | 23 aa hypothetical protein | |||
| 6575 | 61 aa hypothetical protein | |||
| 6580 | M | M2.Hpy1089ORF7535P (100% identity) | CCATC | M2.Hpy1198ORF6580P |
| 6585 | M | M1.Hpy1089ORF7535P (100% identity) | CCATC | M1.Hpy1198ORF6580P |
| 6590 | permease | |||
| 1100 | 67 aa hypothetical protein | |||
| 1105 | M | M.Hpy1089ORF3470P (100% identity) | TGCA | M.Hpy1198ORF1105P |
| 1110 | R | HpyPE105XIVP (100% identity) | TGCA | Hpy1198ORF1105P |
| 1115 | cytochrome C | |||
| 5740 | polysaccharide deacetylase | |||
| 5745 | R | Hpy1089ORF6725P (100% identity) | CTNAG | Hpy1198ORF5750P |
| 5750 | M | M.Hpy1089ORF6725P (100% identity) | CTNAG | M.Hpy1198ORF5750P |
| 5755 | 125 aa hypothetical protein | |||
| 6715 | amidophosphoribosyltransferase | |||
| 6720 | RM | HpyGCT97ORF4455P (98% identity) | Hpy1198ORF6720P | |
| 6725 | S | S1.HpySW01ORF7125P (94% identity) | S1.Hpy1198ORF6720P | |
| 6730 | S | S.HpySP310ORF6805P (43% identity) | S2.Hpy1198ORF6720P | |
| 6735 | DNA polymerase I | |||
| 1645 | agmatine deiminase | |||
| 1650 | M | M1.Hpy1089ORF1385P (100% identity) | CCTC | M1.Hpy1198ORF1650P |
| 1655 | M | M2.Hpy1089ORF1385P (100% identity) | CCTC | M2.Hpy1198ORF1650P |
| 1660 | proline:sodium symporter PutP | |||
| 1850 | membrane protein | |||
| 1855 | M | M.Hpy1089ORF1180P (100% identity) | GATC | M.Hpy1198ORF1855P |
| 1860 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyG006ORF325P (94% identity) | Hpy1198ORF2235P | |
| 2235 | M | M.Hpy1089ORF4030P (100% identity) | M.Hpy1198ORF2235P | |
| 2240 | endonuclease | |||
| 2290 | rod shape-determining protein MreC | |||
| 2295 | R | Hpy1089ORF4095P (99% identity) | Hpy1198ORF2300P | |
| 2300 | M | M.Hpy1089ORF4095P (100% identity) | M.Hpy1198ORF2300P | |
| 2305 | chemotaxis protein CheY | |||
| 6460 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy1089ORF7420P (100% identity) | M.Hpy1198ORF6465P | |
| 6475 | R | Hpy1089ORF7420P (100% identity) | Hpy1198ORF6465P | |
| 6480 | pseudogene | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2585 | llaJI restriction endonuclease | |||
| 2590 | R | Hpy1089McrBP (100% identity) | Hpy1198McrBP | |
| 2595 | 86 aa hypothetical protein | |||