Helicobacter pylori 499/02 |
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Putative Helicobacter pylori 499/02 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,666,733 bp
GenBank #: JTDG00000000 (NZ_JTDG00000000)
REBASE acronym: Hpy499
Org_num: 15068
All begin HPY499_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6580 | membrane protein | |||
| 6585 | M | M.HpyME10ORF4190P (94% identity) | M.Hpy499ORF6585P | |
| 6590 | S | S.HpyC028XV (96% identity) | S.Hpy499ORF6585P | |
| 6595 | R | HpySP210ORF3940P (95% identity) | Hpy499ORF6585P | |
| 6600 | hydroxyethylthiazole kinase | |||
| 1535 | metal-dependent hydrolase | |||
| 1540 | R | HpySP414ORF7230P (94% identity) | Hpy499ORF1545P | |
| 1545 | M | M.HpySP305V (92% identity) | M.Hpy499ORF1545P | |
| 1550 | S | S.HpyPO12ORF7445P (97% identity) | S.Hpy499ORF1545P | |
| 1555 | FAD-dependent thymidylate synthase | |||
| 4290 | 104 aa hypothetical protein | |||
| 4295 | S | S.HpySP802ORF3910P (97% identity) | S.Hpy499ORF4295P | |
| 4300 | cadmium transporter | |||
| 3050 | polyphosphate kinase | |||
| 3060 | S | S.HpyDO10ORF2390P (98% identity) | S.Hpy499ORF3065P | |
| 3065 | M | M.HpyNY40ORF1068P (96% identity) | M.Hpy499ORF3065P | |
| 3070 | R | HpyJO3ORF2295P (92% identity) | Hpy499ORF3065P | |
| 3075 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1375 | RM | HpyH010ORF6645P (67% identity) | Hpy499ORF1375P | |
| 1380 | nicotinate-nucleotide pyrophosphorylase | |||
| 7430 | membrane protein | |||
| 7435 | M | M.HpyPO05V (97% identity) | ATTAAT | M.Hpy499ORF7435P |
| 7440 | glycosyltransferase 9 family protein | |||
| 3410 | pseudogene | |||
| 3415 | M | M.HpyPOR115ORF7670P (98% identity) | GAAGA | M.Hpy499ORF3415P |
| 3420 | elongation factor Ts | |||
| 5850 | 3-5 exonuclease | |||
| 5855 | M | M.Hpyfe62ORF3865P (100% identity) | CCNNGG | M.Hpy499ORF5855P |
| 5860 | R | HpyPOR115IVP (99% identity) | CCNNGG | Hpy499ORF5855P |
| 5865 | acetone carboxylase subunit gamma | |||
| 7445 | GTP-binding protein | |||
| 7450 | M | M.HpyU403II (98% identity) | ACNGT | M.Hpy499ORF7450P |
| 7455 | R | HpySP504IIP (99% identity) | ACNGT | Hpy499ORF7450P |
| 7460 | DNA methyltransferase | |||
| 7455 | restriction endonuclease | |||
| 7460 | M | M.HpyL002ORF2475P (99% identity) | ACGT | M.Hpy499ORF7460P |
| 7465 | R | HpyPO07ORF2420P (98% identity) | ACGT | Hpy499ORF7460P |
| 7470 | 71 aa hypothetical protein | |||
| 5955 | 144 aa hypothetical protein | |||
| 5960 | M | M.HpyPO107XV (97% identity) | GCGC | M.Hpy499ORF5960P |
| 5965 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4910 | peptidase S41 | |||
| 4915 | RM | pseudogene | Hpy499ORF4915P | |
| 590 | pseudogene | |||
| 595 | M | M.HpyR3cORF7075P (87% identity) | GATC | M.Hpy499ORF595P |
| 600 | alpha-1,2-fucosyltransferase | |||
| 2465 | methyltransferase | |||
| 2470 | M | M.HpyF020XIV (99% identity) | TCNNGA | M.Hpy499ORF2470P |
| 2475 | R | HpySWT07ORF5395P (98% identity) | TCNNGA | Hpy499ORF2470P |
| 2480 | Laminin subunit alpha-2 precursor | |||
| 7650 | DNA gyrase subunit B | |||
| 7655 | M | M.HpyPOR115VII (98% identity) | GTAC | M.Hpy499ORF7655P |
| 7660 | R | HpySP07XP (97% identity) | GTAC | Hpy499ORF7655P |
| 7665 | membrane protein | |||
| 7100 | membrane protein | |||
| 7105 | RM | HpyME12ORF3185P (89% identity) | Hpy499ORF7105P | |
| 7110 | glycerol-3-phosphate dehydrogenase | |||
| 6160 | N-acetylneuraminate synthase | |||
| 6165 | R | R2.HpyPE18ORF890P (97% identity) | Hpy499ORF6165P | |
| 7240 | ATP-dependent DNA helicase | |||
| 7245 | M | M.HpyPO13II (97% identity) | GTNNAC | M.Hpy499ORF7245P |
| 7250 | R | HpyGRE040VP (89% identity) | GTNNAC | Hpy499ORF7245P |
| 7255 | flagellar hook protein FlgE | |||
| 3800 | hydrolase | |||
| 3805 | M | M.HpyB140ORF1340P (98% identity) | CATG | M.Hpy499ORF3805P |
| 3810 | R | HpySP13IP (100% identity) | CATG | Hpy499ORF3805P |
| 3815 | pseudogene | |||
| 1625 | DEAD/DEAH box helicase | |||
| 1630 | RM | HpySP14ORF7190P (90% identity) | Hpy499ORF1630P | |
| 1635 | 173 aa hypothetical protein | |||
| 255 | chaperone protein ClpB | |||
| 260 | M | M.HpySP07VII (99% identity) | CCGG | M.Hpy499ORF260P |
| 265 | R | HpySP401ORF1660P (83% identity) | CCGG | Hpy499ORF260P |
| 270 | 204 aa hypothetical protein | |||
| 5355 | agmatine deiminase | |||
| 5360 | M | M1.HpyPOR115V (100% identity) | CCTC | M1.Hpy499ORF5360P |
| 5365 | M | M2.HpyPOR115VP (100% identity) | CCTC | M2.Hpy499ORF5360P |
| 5370 | restriction endonuclease Hin4II | |||
| 5365 | restriction endonuclease | |||
| 5370 | R | HpyPE18VP (99% identity) | CCTTC | Hpy499ORF5375P |
| 5375 | M | M.HpyH011VI (98% identity) | CCTTC | M.Hpy499ORF5375P |
| 5380 | proline:sodium symporter PutP | |||
| 270 | 204 aa hypothetical protein | |||
| 275 | M | M.HpyL035XI (98% identity) | TCGA | M.Hpy499ORF275P |
| 280 | exodeoxyribonuclease VII large subunit | |||
| 1715 | membrane protein | |||
| 1720 | R | HpyPE102IXP (97% identity) | CCATC | Hpy499ORF1725P |
| 1725 | M | M2.HpyPE16VI (93% identity) | CCATC | M2.Hpy499ORF1725P |
| 1730 | M | M1.HpySP111IV (100% identity) | CCATC | M1.Hpy499ORF1725P |
| 1735 | permease | |||
| 1860 | amidophosphoribosyltransferase | |||
| 1865 | RM | HpyPO102ORF7085P (98% identity) | Hpy499ORF1865P | |
| 1870 | S | S.Hpyfe82ORF290P (66% identity) | S.Hpy499ORF1865P | |
| 1875 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8035 | R | HpyBR8ORF6710P (89% identity) | Hpy499ORF8040P | |
| 8040 | M | M.HpyCOL112ORF6845P (95% identity) | M.Hpy499ORF8040P | |
| 8045 | endonuclease | |||
| ??? | M | M.HpySWT13ORF6370P (47% identity) | M.Hpy499ORF3410P | |
| 3415 | restriction endonuclease subunit M | |||
| 8095 | rod shape-determining protein MreC | |||
| 8100 | R | HpyPO13ORF6740P (93% identity) | Hpy499ORF8105P | |
| 8105 | M | M.HpyH025ORF1240P (41% identity) | M.Hpy499ORF8105P | |
| 1610 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyAL4ORF7175P (95% identity) | M.Hpy499ORF1615P | |
| 1625 | R | HpyDO5ORF7670P (94% identity) | Hpy499ORF1615P | |
| 1630 | restriction endonuclease | |||