Xenorhabdus nematophila C2-3 |
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Putative Xenorhabdus nematophila C2-3 RM systems
Ref: Hong,S.J. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19042
Contig set: 4,386,383 bp
GenBank #: JRJV00000000 (NZ_JRJV00000000)
REBASE acronym: XneC23
Org_num: 15036
All begin LH67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16680 | integrase | |||
| 16685 | R | XneSORF1255P (100% identity) | XneC23ORF16695P | |
| 16690 | S | S.XneSORF1255P (100% identity) | S.XneC23ORF16695P | |
| 16695 | M | M.XneSORF1255P (100% identity) | M.XneC23ORF16695P | |
| 17975 | transposase | |||
| 17980 | R | XneSORF16970P (98% identity) | XneC23ORF17980P | |
| 17985 | S | S2.XneSORF16970P (88% identity) | S.XneC23ORF17980P | |
| 17990 | transposase | |||
| 18395 | transposase | |||
| 18400 | M | M.XneSORF16970BP (100% identity) | M.XneC23ORF18400P | |
| 18405 | pseudogene | |||
| 19165 | pseudogene | |||
| 19170 | S | S1.XneSORF16970P (60% identity) | S.XneC23ORF19180P | |
| 19175 | pseudogene | |||
| 19180 | M | M.XneSORF16970AP (100% identity) | M.XneC23ORF19180P | |
| 19185 | 91 aa hypothetical protein | |||
| 13285 | R | XneSORF18345P (99% identity) | XneC23ORF13295P | |
| 13290 | S | S.XneSORF18345P (90% identity) | S.XneC23ORF13295P | |
| 13295 | M | M.XneSORF18345P (100% identity) | M.XneC23ORF13295P | |
| 13300 | transposase | |||
| 5885 | 80 aa hypothetical protein | |||
| 5890 | R | XneSORF15165P (99% identity) | XneC23ORF5905P | |
| ??? | S | S.XneSORF15165P (98% identity) | S.XneC23ORF5905P | |
| 5905 | M | M.XneSORF15165P (100% identity) | M.XneC23ORF5905P | |
| 5910 | glucosamine--fructose-6-phosphate | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19295 | 82 aa hypothetical protein | |||
| 19300 | M | M.XneSORF1600P (100% identity) | CTGAAG | M.XneC23ORF19300P |
| 19305 | transposase, partial | |||
| 19925 | transcriptional regulator | |||
| 19930 | M | M.XneSORF700P (59% identity) | CTGCAG | M.XneC23ORF19930P |
| 19935 | R | M.XneSORF700P (39% identity) | CTGCAG | XneC23ORF19930P |
| 19940 | single-stranded DNA-binding protein | |||
| 16600 | pseudogene | |||
| 16605 | RM | XneSORF1600P (100% identity) | CTGAAG | XneC23ORF16605P |
| 16610 | integrase | |||
| 6500 | membrane protein | |||
| 6505 | M | M.XneSDamP (99% identity) | GATC | M.XneC23DamP |
| 6510 | ribulose-phosphate 3-epimerase | |||
| 12460 | 143 aa hypothetical protein | |||
| 12465 | M | M.XnePORF56P (93% identity) | CCNGG | M.XneC23ORF12465P |
| 12470 | 76 aa hypothetical protein | |||
| 14480 | 120 aa hypothetical protein | |||
| ??? | M | M.XnePORF187P (100% identity) | M.XneC23ORF14485P | |
| 14490 | 66 aa hypothetical protein | |||