Escherichia coli 5-366-08_S1_C1 |
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Putative Escherichia coli 5-366-08_S1_C1 RM systems
Ref: Silbergeld,E. et al. unpublished
REBASE ref # 19165
Contig set: 5,446,335 bp
GenBank #: JOQU00000000 (NZ_JOQU00000000)
REBASE acronym: EcoS1C1
Org_num: 14928
All begin AB08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 256 | TIR domain protein | |||
| ??? | M | M1.EcoS1C3ORF4992P (100% identity) | M1.EcoS1C1ORF257P | |
| ??? | M | M2.EcoS1C3ORF4992P (100% identity) | M2.EcoS1C1ORF257P | |
| 259 | S | S.EcoS1C3ORF4992P (100% identity) | S.EcoS1C1ORF257P | |
| 260 | R | EcoS1C3ORF4992P (100% identity) | EcoS1C1ORF257P | |
| 261 | type I restriction modification DNA specificity | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5582 | M | DNA methylase family protein | M.EcoS1C1ORF5582P | |
| 5583 | 41 aa hypothetical protein | |||
| 5412 | 73 aa hypothetical protein | |||
| 5413 | M | M.EcoS1C3ORF5285P (99% identity) | M.EcoS1C1ORF5413P | |
| 5414 | 41 aa hypothetical protein | |||
| 3232 | 231 aa hypothetical protein | |||
| 3233 | M | M.EcoSN137DcmP (100% identity) | CCWGG | M.EcoS1C1DcmP |
| ??? | V | V.EcoS1C3DcmP (100% identity) | V.EcoS1C1DcmP | |
| 3235 | 306 aa hypothetical protein | |||
| 2266 | 37 aa hypothetical protein | |||
| 2267 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoS1C1ORF2267P |
| 2268 | DNA-binding protein fis | |||
| 5099 | lexA DNA binding domain protein | |||
| 5100 | M | M.EcoS1C3ORF349P (100% identity) | GATC | M.EcoS1C1ORF5100P |
| 5101 | 44 aa hypothetical protein | |||
| 1933 | 47 aa hypothetical protein | |||
| 1934 | M | M.Sdy9753ORFBP (99% identity) | GATC | M.EcoS1C1ORF1934P |
| 1935 | prophage CP4-57 regulatory family protein | |||
| 1842 | protein damX | |||
| 1843 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS1C1DamP |
| 1844 | ribulose-phosphate 3-epimerase | |||
| 927 | flagella basal body P-ring formation protein | |||
| 928 | M | M.Ecoi362ORF3506P (100% identity) | CCWGG | M.EcoS1C1ORF928P |
| 929 | R | EcoS1C3ORF279P (100% identity) | CCWGG | EcoS1C1ORF928P |
| 930 | flagellar biosynthesis anti-sigma factor FlgM | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4774 | 115 aa hypothetical protein | |||
| 4775 | R | EcoSW4848GmrSD2P (100% identity) | EcoS1C1GmrSDP | |
| 4776 | 54 aa hypothetical protein | |||