Yersinia pseudotuberculosis YPIII |
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Putative Yersinia pseudotuberculosis YPIII RM systems
Ref: Bishop-Lilly,K.A. et al. unpublished
REBASE ref # 18070
Complete sequence: 4,689,436 bp
GenBank #: CP009792
REBASE acronym: YpsYP
Org_num: 4995
All begin BZ22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8 | 100 aa hypothetical protein | |||
| 9 | R | Yps584ORF21290P (96% identity) | CRAANNNNNNCTC | R1.YpsYPIP |
| 10 | 40 aa hypothetical protein | |||
| 11 | phage integrase family protein | |||
| 12 | 59 aa hypothetical protein | |||
| 13 | 61 aa hypothetical protein | |||
| 14 | mcrBC 5-methylcytosine restriction system | |||
| ??? | M | M.Yps584ORF21325P (100% identity) | CRAANNNNNNCTC | M.YpsYPI |
| 16 | S | S.Yps584ORF21325P (100% identity) | CRAANNNNNNCTC | S.YpsYPI |
| 18 | R | Yps584ORF21325P (100% identity) | CRAANNNNNNCTC | R2.YpsYPIP |
| 19 | phage integrase family protein | |||
| 652 | 371 aa hypothetical protein | |||
| 653 | M | M.Yps584ORF2715P (98% identity) | M.YpsYPORF65P | |
| 654 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 769 | ADP compounds hydrolase nudE | |||
| 770 | M | M.Yps584ORF3305P (100% identity) | M.YpsYPORF181P | |
| 771 | caudovirales tail fiber assembly family protein | |||
| 814 | sporulation related domain protein | |||
| 815 | M | M.Ysi228DamP (100% identity) | GATC | M.YpsYPDamP |
| 816 | ribulose-phosphate 3-epimerase | |||
| 2867 | exonuclease family protein | |||
| 2868 | M | M.Yps584ORF14330P (100% identity) | GATC | M1.YpsYPORF2320P |
| 2869 | M | M.Yps584ORF14335P (100% identity) | M2.YpsYPORF2320P | |
| 2870 | bacteriophage replication protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13 | 61 aa hypothetical protein | |||
| 14 | R | mcrBC 5-methylcytosine restriction system | YpsYPMcrCP | |
| ??? | type I restriction-modification system, M subunit | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1463 | gpB bacteriophage P2-like protein | |||
| 1464 | M | M.Yps584ORF6985P (100% identity) | GATC | M.YpsYPORF888P |
| 1465 | 75 aa hypothetical protein | |||