Helicobacter pylori 26695-1 |
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Putative Helicobacter pylori 26695-1 RM systems
Ref: Binh,T. et al. unpublished
REBASE ref # 18924
Complete sequence: 1,667,638 bp
GenBank #: CP010435
REBASE acronym: HpyA1
Org_num: 11337
All begin SE87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2390 | 162 aa hypothetical protein | |||
| 2395 | S | S.HpyS299ORF3810P (100% identity) | S.HpyA1ORFWP | |
| 2400 | type I restriction enzyme M protein | |||
| 2405 | M | M.HpyS299ORF3810P (100% identity) | M.HpyA1ORFWP | |
| 2410 | R | HpyS299ORF3810P (100% identity) | HpyA1ORFWP | |
| 2415 | 631 aa hypothetical protein | |||
| 4020 | 48 aa hypothetical protein | |||
| 4025 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyA1ORFPP |
| 4030 | cadmium transporter | |||
| 4305 | hydroxyethylthiazole kinase | |||
| ??? | R | HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | HpyA1ORFNP |
| 4315 | 33 aa hypothetical protein | |||
| ??? | S | S.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | S.HpyA1ORFNP |
| 4330 | restriction endonuclease | |||
| ??? | type I restriction endonuclease subunit S | |||
| 4330 | M | M.HpyS299ORF1890P (100% identity) | M.HpyA1ORF4330P | |
| 4335 | membrane protein | |||
| 7210 | metal-dependent hydrolase | |||
| ??? | R | HpyS299ORF7180P (100% identity) | HpyA1ORFEP | |
| 7220 | M | M.HpyS299ORF7180P (100% identity) | M.HpyA1ORFEP | |
| ??? | S | S.HpyRif2ORF7260P (100% identity) | S.HpyA1ORFEP | |
| 7230 | 74 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | agmatine deiminase | |||
| 265 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyA1ORFB1P |
| 270 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyA1ORFB1P |
| ??? | R | HpyRif1ORF230P (100% identity) | CCTC | HpyA1ORFB1P |
| 280 | restriction endonuclease Hin4II | |||
| ??? | HNH endonuclease family protein | |||
| 280 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyA1ORFC1P |
| 285 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyA1ORFC1P |
| 290 | proline:sodium symporter PutP | |||
| 475 | malonyl CoA-ACP transacylase | |||
| 485 | R | HpyS299VP (100% identity) | GATC | HpyA1ORFA1P |
| 490 | M | M.HpyS299V (100% identity) | GATC | M.HpyA1ORFA1P |
| 495 | alpha-1,2-fucosyltransferase | |||
| 1335 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyS299VII (100% identity) | TCGA | M.HpyA1ORFYP |
| 1345 | 132 aa hypothetical protein | |||
| 1345 | 132 aa hypothetical protein | |||
| ??? | R | HpyS299ORF4845P (100% identity) | CCGG | HpyA1ORFZP |
| 1355 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyA1ORFZP |
| 1360 | chaperone protein ClpB | |||
| 1890 | Laminin subunit alpha-2 precursor | |||
| 1895 | R | HpyRif2ORF1870P (100% identity) | TCNNGA | HpyA1ORFXP |
| 1900 | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyA1ORFXP |
| 1905 | acetyl-CoA carboxylase | |||
| 2475 | membrane protein | |||
| 2480 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyA1ORFTP |
| 2485 | glycosyltransferase 9 family protein | |||
| 2490 | GTP-binding protein | |||
| 2495 | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyA1ORFUP |
| 2500 | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyA1ORFUP |
| 2505 | 348 aa hypothetical protein | |||
| 2500 | 207 aa hypothetical protein | |||
| ??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyA1ORFVP |
| 2510 | R | HpyS299ORF3700P (100% identity) | ACGT | HpyA1ORFVP |
| 2515 | 81 aa hypothetical protein | |||
| 2600 | DNA gyrase subunit B | |||
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyA1ORFSP |
| ??? | R | HpyRif2ORFDP (100% identity) | GTAC | HpyA1ORFSP |
| 2615 | membrane protein | |||
| 3430 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyRif2ORFGP (100% identity) | HpyA1ORFQP | |
| 3445 | 449 aa hypothetical protein | |||
| 4640 | flagellar hook protein FlgE | |||
| 4645 | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyA1ORFMP |
| 4650 | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.HpyA1ORFMP |
| 4655 | ATP-dependent DNA helicase | |||
| 5755 | 144 aa hypothetical protein | |||
| 5760 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyA1ORFLP |
| 5765 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6235 | hydrolase | |||
| 6240 | M | M.HpyS299I (100% identity) | CATG | M.HpyA1ORFKP |
| 6245 | R | HpyRif2ORF6260P (100% identity) | CATG | HpyA1ORFKP |
| 6250 | serine acetyltransferase | |||
| 6955 | peptidase S41 | |||
| 6960 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyA1ORFIP |
| 6965 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyA1ORFIP |
| ??? | Type IIG R-M system | |||
| 6965 | DNA methyltransferase | |||
| ??? | RM | HpyRif2ORF6990P (100% identity) | HpyA1ORFJP | |
| 6985 | nicotinate-nucleotide pyrophosphorylase | |||
| 7035 | chemotaxis protein CheY | |||
| 7040 | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyA1ORFGP |
| 7045 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyA1ORFGP |
| 7050 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyA1ORFGP |
| 7055 | adenine methyltransferase | |||
| 7580 | DNA polymerase I | |||
| 7585 | S | S.HpyA1CLORFDP (100% identity) | S.HpyA1ORFDP | |
| 7590 | RM | HpyS299ORF6805P (100% identity) | HpyA1ORFDP | |
| 7595 | amidophosphoribosyltransferase | |||
| 7805 | 179 aa hypothetical protein | |||
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyA1ORF7810P |
| 7820 | pseudogene | |||
| 7905 | transposase | |||
| 7910 | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.HpyA1ORFAP |
| 7915 | R | HpyS299ORF6490P (100% identity) | TGCA | HpyA1ORFAP |
| 7920 | cytochrome C | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3060 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 3065 | R | HpyS299VIP (97% identity) | GCAG | HpyA1ORFRP |
| 3070 | M | M.HpyS299VI (100% identity) | GCAG | M.HpyA1ORFRP |
| 3075 | 54 aa hypothetical protein | |||
| 7050 | restriction endonuclease subunit M | |||
| 7055 | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyA1ORFHP |
| 7060 | R | HpyS299ORF7350P (100% identity) | TCAG | HpyA1ORFHP |
| 7065 | rod shape-determining protein MreC | |||
| 7820 | pseudogene | |||
| 7825 | R | HpyS299ORF6570P (100% identity) | HpyA1ORFCP | |
| ??? | M | M.HpyRif2ORFBP (100% identity) | M.HpyA1ORFCP | |
| 7840 | ATP-dependent DNA helicase RecG | |||
| 7825 | DEAD/DEAH box helicase | |||
| ??? | M | M.HpyRif2ORFBP (100% identity) | M.HpyA1ORF7830P | |
| 7840 | ATP-dependent DNA helicase RecG | |||