Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50973 |
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Putative Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50973 RM systems
Ref: Wang,B. et al. unpublished
REBASE ref # 18899
Complete sequence: 4,599,018 bp
GenBank #: CP009049
REBASE acronym: Sen50973
Org_num: 14654
All begin IT63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2590 | endoribonuclease SymE | |||
| 2595 | S | S.StyTORF4575P (97% identity) | GAANNNNNNNNTCGC | S.Sen50973ORF2600P |
| 2600 | M | M.SptAIII (100% identity) | GAANNNNNNNNTCGC | M.Sen50973ORF2600P |
| 2605 | R | SptAIIIP (100% identity) | GAANNNNNNNNTCGC | Sen50973ORF2600P |
| 2610 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2320 | integrase | |||
| 2325 | M | M.SptAI (100% identity) | CAGCTG | M.Sen50973ORF2325P |
| ??? | C | C.SptAI (100% identity) | C.Sen50973ORF2325P | |
| 2330 | R | SptAIP (100% identity) | CAGCTG | Sen50973ORF2325P |
| 2335 | phage polarity suppression protein | |||
| 7255 | hydrolase | |||
| 7260 | M | M.SptADcm (100% identity) | CCWGG | M.Sen50973ORF7260P |
| 7265 | very short patch repair endonuclease | |||
| 7260 | DNA cytosine methylase | |||
| 7265 | V | V.StyUK1DcmP (100% identity) | V.Sen50973DcmP | |
| 7270 | multidrug DMT transporter | |||
| 16190 | replication protein A | |||
| 16200 | M | M.SptAORF2624P (100% identity) | GATC | M.Sen50973ORF16200P |
| 16205 | 76 aa hypothetical protein | |||
| 19390 | Fis family transcriptional regulator | |||
| 19395 | M | M.SptAORF3253P (100% identity) | ATGCAT | M.Sen50973ORFAP |
| 19400 | membrane protein | |||
| 19870 | ribulose-phosphate 3-epimerase | |||
| 19875 | M | M.SptADamP (100% identity) | GATC | M.Sen50973DamP |
| 19880 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14760 | ubiquinol oxidase subunit II | |||
| 14775 | R | SptAIIP (100% identity) | CAGAG | Sen50973ORF14780P |
| 14780 | M | M.SptAII (100% identity) | CAGAG | M.Sen50973ORF14780P |
| 14785 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2605 | DEAD/DEAH box helicase | |||
| 2610 | R | SptAMrrP (100% identity) | Sen50973MrrP | |
| 2615 | membrane protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15990 | endonuclease | |||
| 15995 | M | M.StyTORF4329P (100% identity) | GATC | M.Sen50973ORF15995P |
| 16000 | 3-5 exonuclease | |||