Helicobacter species MIT 05-5293 |
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Putative Helicobacter species MIT 05-5293 RM systems
Ref: Sheh,A. et al. unpublished
REBASE ref # 18605
GenBank #: JROZ00000000
REBASE acronym: Hsp5293
Org_num: 14435
All begin LS68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10015 | R | DEAD/DEAH box helicase | Hsp5293ORF10015P | |
| 10020 | S | S.FspGS13ORF105P (22% identity) | S.Hsp5293ORF10015P | |
| 10025 | 2,5-diketo-D-gluconic acid reductase | |||
| 10030 | M | M.Hsp5293ORF6060P (99% identity) | M.Hsp5293ORF10030P | |
| 10035 | S | S.Hsp5293ORF6060P (91% identity) | S.Hsp5293ORF10030P | |
| 10300 | S | S.Hap1501ORF4715P (33% identity) | S.Hsp5293ORF10300P | |
| 9465 | transcriptional regulator | |||
| 9470 | M | M.HmuST1ORF4245P (84% identity) | M.Hsp5293ORF9455P | |
| 9475 | acetyltransferase | |||
| 8935 | 192 aa hypothetical protein | |||
| 8940 | M | M.Hty6810ORF3025P (78% identity) | M.Hsp5293ORF6110P | |
| 8945 | 91 aa hypothetical protein | |||
| ??? | S | S.Hsp5293ORF6110P (63% identity) | S1.Hsp5293ORF6110P | |
| 8950 | S | S1.Hsp5293ORF6110P (63% identity) | S.Hsp5293ORF6110P | |
| ??? | S | predicted protein | S2.Hsp5293ORF6110P | |
| 8955 | 122 aa hypothetical protein | |||
| 8960 | 325 aa hypothetical protein | |||
| 8965 | R | Hap1501ORF4375P (76% identity) | Hsp5293ORF6110P | |
| 8970 | ankyrin | |||
| 7760 | 500 aa hypothetical protein | |||
| 7765 | S | S1.Cup736ORF30P (52% identity) | S.Hsp5293ORF7770P | |
| 7770 | M | M.Hci12219ORF47P (79% identity) | M.Hsp5293ORF7770P | |
| 7775 | 280 aa hypothetical protein | |||
| 6050 | molybdopterin biosynthesis protein | |||
| 6055 | S | S.Hsp5293ORF10030P (91% identity) | S.Hsp5293ORF6060P | |
| 6060 | M | M.Hsp5293ORF10030P (99% identity) | M.Hsp5293ORF6060P | |
| 6065 | 2,5-diketo-D-gluconic acid reductase | |||
| 6105 | 192 aa hypothetical protein | |||
| 6110 | M | M.Hty6810ORF3025P (78% identity) | M.Hsp5293ORF6110P | |
| 6115 | 91 aa hypothetical protein | |||
| 6120 | S | S1.Hsp5293ORF6110P (63% identity) | S.Hsp5293ORF6110P | |
| 6125 | 122 aa hypothetical protein | |||
| 6130 | 325 aa hypothetical protein | |||
| 6135 | R | Hap1501ORF4375P (76% identity) | Hsp5293ORF6110P | |
| 6140 | ankyrin | |||
| 3940 | 358 aa hypothetical protein | |||
| 3945 | S | S1.AspE39ORF6975P (28% identity) | S.Hsp5293ORF3950P | |
| 3950 | M | M.Hca12410ORF129P (61% identity) | M.Hsp5293ORF3950P | |
| 3955 | R | Hca12410ORF129P (54% identity) | Hsp5293ORF3950P | |
| 3960 | 429 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8390 | 30S ribosomal protein S2 | |||
| 8395 | M | M.Hsp6451ORF9990P (66% identity) | CATG | M1.Hsp5293ORF8395P |
| 8400 | 149 aa hypothetical protein C809_01959 | |||
| 8405 | M | M1.Cig1214ORF915P (39% identity) | CATG | M2.Hsp5293ORF8395P |
| 8410 | RNA polymerase sigma54 factor | |||
| 165 | 3-isopropylmalate dehydrogenase | |||
| 170 | RM | Hsp5569ORF9475P (10% identity) | Hsp5293ORF170P | |
| 175 | 203 aa hypothetical protein | |||
| 5050 | aldehyde oxidase | |||
| 5055 | M | M.Hfe13102ORF1054P (77% identity) | ACNGT | M.Hsp5293ORF5055P |
| 5060 | R | HhiYS1ORFOP (88% identity) | ACNGT | Hsp5293ORF5055P |
| 5065 | 85 aa hypothetical protein | |||
| 5170 | arginyl-tRNA--protein transferase | |||
| 5175 | RM | HmuST1ORF2160P (44% identity) | Hsp5293ORF5175P | |
| 5180 | carbon starvation protein A | |||
| 5265 | ferrous iron transporter B | |||
| 5275 | M | M.RpiECORF50P (27% identity) | M1.Hsp5293ORF5275P | |
| 5280 | M | M1.Sov2ORF4510P (31% identity) | M2.Hsp5293ORF5275P | |
| 5285 | 80 aa hypothetical protein | |||
| 5900 | chemotaxis protein, partial | |||
| 5905 | RM | Hsp5569ORF9475P (36% identity) | Hsp5293ORF5905P | |
| ??? | hypothetical protein | |||
| 5905 | type II restriction endonuclease | |||
| ??? | RM | HmuST1ORF4975P (39% identity) | Hsp5293ORF5910P | |
| 5915 | 182 aa hypothetical protein LS69_11785, partial | |||
| 1475 | 170 aa hypothetical protein | |||
| 1480 | M | M.HhiYS1ORFC1P (78% identity) | AAGCTT | M.Hsp5293ORF1480P |
| 1485 | 242 aa hypothetical protein | |||
| 6450 | 170 aa hypothetical protein | |||
| ??? | M | M.HmuST1ORF8960P (56% identity) | GTSAC | M.Hsp5293ORFAP |
| 6460 | 119 aa hypothetical protein | |||
| 6525 | 160 aa hypothetical protein | |||
| 6530 | M | M.Hbi43879ORF1253P (46% identity) | M.Hsp5293ORF6530P | |
| 6535 | 74 aa hypothetical protein | |||
| 2505 | pseudogene | |||
| 2510 | RM | Hsp6451ORF3165P (43% identity) | Hsp5293ORF2500CP | |
| 2515 | RM | Taz9ORF385P (7% identity) | Hsp5293ORF2500BP | |
| 2520 | RM | Hsp1614ORF2475BP (50% identity) | Hsp5293ORF2500AP | |
| 2525 | alpha-2-macroglobulin family N-terminal region, partial | |||
| 2605 | adenylosuccinate lyase | |||
| 2610 | M | M.HmuST1ORF3175P (77% identity) | GANTC | M.Hsp5293ORF2610P |
| 2615 | citrate:succinate antiporter | |||
| 4330 | 62 aa hypothetical protein | |||
| 4335 | R | Hty6810ORFAP (86% identity) | GTSAC | Hsp5293ORF4335P |
| 4340 | 736 aa hypothetical protein | |||
| 4540 | 84 aa hypothetical protein | |||
| 4545 | RM | Hfe50ORF1365P (55% identity) | Hsp5293ORF4540P | |
| 4550 | membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2635 | chemotaxis protein, partial | |||
| 2640 | M | M.Hca1463ORFIP (30% identity) | M.Hsp5293ORF2640P | |
| 2645 | R | Hsp5569ORF10020P (65% identity) | Hsp5293ORF2640P | |
| 2650 | 232 aa hypothetical protein LS65_06825 | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8910 | 249 aa hypothetical protein | |||
| 8915 | R | Hsp6451McrBP (33% identity) | Hsp5293McrBP | |
| 8920 | R | Hsp5569McrCP (57% identity) | Hsp5293McrCP | |
| 8925 | 208 aa hypothetical protein | |||
| 6080 | 249 aa hypothetical protein | |||
| 6085 | R | Hsp6451McrBP (33% identity) | Hsp5293McrBP | |
| 6090 | R | Hsp5569McrCP (57% identity) | Hsp5293McrCP | |
| 6095 | 208 aa hypothetical protein | |||