Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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Putative Salmonella enterica subsp. enterica serovar Newport str. SL254 RM systems
Ref: Ravel,J. et al. unpublished
REBASE ref #
| Sequence length: | GenBank #: | |
| Chromosome: | 4,827,641 bp | CP001113 (NC_011080) |
| plasmid pSN254: | 176,473 bp | CP000604 (NC_009140) |
REBASE acronym: SenN
Org_num: 5016
All begin SNSL254_A, SNSL254_pSN254_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4879 | endoribonuclease SymE | |||
| 4880 | S | S.SenS224ORF19910P (100% identity) | GACNNNNNNNRTCC | S.SenNORF4881P |
| 4881 | M | M.SenS3ORF11567P (100% identity) | GACNNNNNNNRTCC | M.SenNORF4881P |
| 4882 | R | Spy5740IP (100% identity) | GACNNNNNNNRTCC | SenNORF4881P |
| 4883 | membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1142 | 82 aa conserved hypothetical protein | |||
| ??? | M | M.SenN1543ORF17225P (100% identity) | GATC | M.SenNORF1143P |
| 1144 | 112 aa conserved hypothetical protein | |||
| 2153 | carboxylate/amino acid/amine transporter | |||
| 2154 | V | V.StyTDcmP (100% identity) | V.SenNDcmP | |
| 2155 | M | M.Sens29927DcmP (100% identity) | CCWGG | M.SenNDcmP |
| 2156 | metal dependent phosphohydrolase | |||
| 2941 | replication gene A protein | |||
| 2942 | M | M.SenU1590ORF19885P (100% identity) | GATC | M.SenNORF2942P |
| 2943 | gp91 | |||
| 3649 | DNA-binding protein Fis | |||
| 3650 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenNORF3650P |
| 3651 | periplasmic protein | |||
| 3755 | ribulose-phosphate 3-epimerase | |||
| 3756 | M | M.StyTDamP (100% identity) | GATC | M.SenNDamP |
| 3757 | protein DamX | |||
| plasmid pSN254 | ||||
| 124 | 100 aa hypothetical protein | |||
| 125 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.SenNORF125P |
| 126 | 143 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 396 | major facilitator superfamily MFS_1 | |||
| 397 | M | M.SenZYXORFDP (100% identity) | CAGAG | M.SenNORF397P |
| 398 | R | Ssp6947IIP (99% identity) | CAGAG | SenNORF397P |
| 399 | 39 aa hypothetical protein | |||