Helicobacter muridarum ST1 |
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Putative Helicobacter muridarum ST1 RM systems
Ref: Sheh,A. et al. unpublished
REBASE ref # 18605
GenBank #: JRPD00000000
REBASE acronym: HmuST1
Org_num: 14437
All begin LS73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10600 | S | S1.HmuST1ORF3025P (81% identity) | S.HmuST1ORF10600P | |
| 995 | 102 aa hypothetical protein | |||
| 1000 | R | Chy27631ORF1756P (41% identity) | HmuST1ORF1000P | |
| 1005 | DEAD/DEAH box helicase | |||
| 1010 | aldo/keto reductase | |||
| 1015 | pseudogene | |||
| 1020 | 216 aa hypothetical protein | |||
| 1025 | NADPH quinone reductase MdaB | |||
| 1030 | S | S2.Hmu12714ORF1622P (84% identity) | S.HmuST1ORF1000P | |
| 1035 | phosphoheptose isomerase | |||
| 4190 | 77 aa hypothetical protein | |||
| ??? | S | predicted protein | S.HmuST1ORFAP | |
| 4200 | 74 aa hypothetical protein | |||
| 4240 | 128 aa hypothetical protein LS75_03125 | |||
| 4245 | M | M.Hmu12714ORF1622P (100% identity) | M.HmuST1ORF4245P | |
| 4250 | RlfA | |||
| 4255 | 171 aa hypothetical protein | |||
| 4260 | S | S1.Hmu12714ORF1622P (96% identity) | S.HmuST1ORF4245P | |
| 4270 | prenyltransferase | |||
| 1830 | CRISPR-associated protein Cas2 | |||
| 1835 | M | M.HpyK048ORF4155P (55% identity) | M.HmuST1ORF1835P | |
| 1840 | 70 aa hypothetical protein | |||
| 3020 | 66 aa hypothetical protein | |||
| ??? | S | S2.HmuST1ORF3025P (99% identity) | S1.HmuST1ORF3025P | |
| ??? | S | S1.HmuST1ORF3025P (99% identity) | S2.HmuST1ORF3025P | |
| 3035 | S-adenosylmethionine synthetase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3170 | ribonuclease J | |||
| 3175 | M | M.Hmu12714ORF718P (97% identity) | GANTC | M.HmuST1ORF3175P |
| 3180 | pseudogene | |||
| 3190 | 60 aa hypothetical protein | |||
| 3195 | R | Hmu12714ORF725P (99% identity) | GTAC | HmuST1ORF3200P |
| 3200 | M | M.Hmu12714ORF725P (100% identity) | GTAC | M.HmuST1ORF3200P |
| 3205 | pseudogene | |||
| 3200 | 367 aa hypothetical protein | |||
| 3205 | M | M.Hmu12714V (98% identity) | CCGG | M.HmuST1ORF3205P |
| 3210 | R | Hmu12714VP (100% identity) | CCGG | HmuST1ORF3205P |
| 3215 | DNA methylase | |||
| 3210 | endonuclease MjaVIP | |||
| 3215 | M | M.Hmu12714ORF729P (100% identity) | GATC | M.HmuST1ORF3180P |
| 3220 | R | Hmu12714ORF729P (100% identity) | GATC | HmuST1ORF3180P |
| 3225 | 69 aa hypothetical protein | |||
| 3225 | 69 aa hypothetical protein | |||
| 3230 | M | M.Hmu12714III (100% identity) | GATATC | M.HmuST1ORF3230P |
| 3235 | R | Hmu12714IIIP (100% identity) | GATATC | HmuST1ORF3230P |
| 3240 | adenylosuccinate lyase | |||
| 3240 | adenylosuccinate lyase | |||
| 3245 | M | M.Hmu12714ORF735P (38% identity) | M.HmuST1ORF3245P | |
| 3250 | 131 aa hypothetical protein | |||
| 8935 | 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding family protein | |||
| 8940 | M | M1.Hmu12714ORF1112P (100% identity) | GATC | M1.HmuST1ORF8940P |
| 8945 | R | Hmu12714ORF1112P (86% identity) | GATC | HmuST1ORF8940P |
| 8950 | M | M2.Hmu12714ORF1112P (99% identity) | GATC | M2.HmuST1ORF8940P |
| 8955 | 82 aa hypothetical protein | |||
| 8955 | 82 aa hypothetical protein | |||
| 8960 | M | M.Hmu12714ORF1117P (94% identity) | GTSAC | M.HmuST1ORF8960P |
| 6075 | peptidase M24 | |||
| ??? | M | M.Hmu12714ORF1118P (92% identity) | GGCC | M.HmuST1ORF6080P |
| 6080 | R | Hmu12714ORF1118P (87% identity) | GGCC | HmuST1ORF6080P |
| 6085 | 160 aa hypothetical protein | |||
| 6090 | pseudogene | |||
| 6095 | M | M.Hmu12714ORF1123P (100% identity) | M.HmuST1ORF6095P | |
| 6100 | 84 aa hypothetical protein | |||
| 6100 | 84 aa hypothetical protein | |||
| 6105 | M | M.Hmu12714ORF1125P (97% identity) | M.HmuST1ORF6105P | |
| 6110 | pseudogene | |||
| 6105 | restriction endonuclease subunit M | |||
| 6110 | R | Hmu12714IVP (100% identity) | CCNNGG | HmuST1ORF6115P |
| 6115 | M | M.Hmu12714IV (100% identity) | CCNNGG | M.HmuST1ORF6115P |
| 6120 | GMP synthase | |||
| 470 | flagellin protein | |||
| 475 | RM | Hmu12714ORF1651P (100% identity) | HmuST1ORF475P | |
| 480 | 73 aa hypothetical protein | |||
| 3680 | gluconolactonase | |||
| ??? | M | M.Hmu12714ORF452P (91% identity) | M.HmuST1ORF3685P | |
| 3690 | 70 aa hypothetical protein | |||
| 6590 | 506 aa hypothetical protein | |||
| 6595 | RM | Hmu12714ORF1639P (100% identity) | HmuST1ORF6595P | |
| 6600 | S | S1.Hmu12714ORF1639P (86% identity) | S.HmuST1ORF6595P | |
| 6605 | sodium-and chloride-dependent transporter | |||
| 4165 | 286 aa hypothetical protein | |||
| 4170 | M | M.Hmu12714VI (100% identity) | CGCG | M.HmuST1ORF4170P |
| 4175 | 183 aa hypothetical protein | |||
| 4180 | 106 aa hypothetical protein | |||
| ??? | M | M1.Hsp1616ORF6705P (51% identity) | GAAGA | M.HmuST1ORF4185P |
| 4190 | 77 aa hypothetical protein | |||
| 4225 | 624 aa hypothetical protein | |||
| 4230 | M | M2.Hmu12714II (100% identity) | GCATC | M.HmuST1ORF4230P |
| 4235 | DNA methyltransferase | |||
| 4230 | DNA adenine methylase | |||
| 4235 | M | M1.Hmu12714II (100% identity) | CCATC | M.HmuST1ORF4235P |
| 4240 | 128 aa hypothetical protein LS75_03125 | |||
| 7000 | 496 aa hypothetical protein | |||
| 7005 | M | M2.Hmu12714I (100% identity) | GAAGA | M1.HmuST1ORF7005P |
| 7010 | 230 aa hypothetical protein | |||
| 7015 | M | M1.Hmu12714I (100% identity) | GAAGA | M2.HmuST1ORF7005P |
| 7020 | R | Hmu12714IP (100% identity) | GAAGA | HmuST1ORF7005P |
| 7025 | Na+/H+ antiporter NhaC family protein | |||
| 7030 | cupin domain-containing protein | |||
| 7035 | RM | Hmu12714ORF1709P (66% identity) | HmuST1ORF7035P | |
| 7040 | 67 aa hypothetical protein | |||
| 7065 | DUF262 and DUF1524 domain-containing protein | |||
| 7070 | M | M.Hmu12714ORF1700P (84% identity) | AAGCTT | M.HmuST1ORF7070P |
| 7075 | 61 aa hypothetical protein | |||
| 4970 | MFS transporter | |||
| 4975 | RM | Hmu12714ORF1693P (97% identity) | HmuST1ORF4975P | |
| 4980 | 203 aa hypothetical protein LS74_10960 | |||
| 2150 | 417 aa hypothetical protein | |||
| ??? | RM | Hmu12714ORF1160P (83% identity) | HmuST1ORF2160P | |
| 2165 | M | M.Hmu12714ORF1158P (92% identity) | ACNGT | M.HmuST1ORF2160P |
| 2170 | 232 aa hypothetical protein | |||
| 5360 | 308 aa hypothetical protein | |||
| 5365 | M | M.Hmu12714ORF1699P (69% identity) | CCWGG | M.HmuST1ORF5365P |
| 5370 | DNA modification methylase | |||
| 5365 | 291 aa hypothetical protein | |||
| 5370 | R | Hmu12714ORF1699P (100% identity) | CCGG | HmuST1ORF5370P |
| 5375 | pseudogene | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10540 | M | M1.HmuST1ORF3055P (27% identity) | M.HmuST1ORF10540P | |
| 6555 | FAD-dependent oxidoreductase | |||
| 6560 | R | Hmu12714ORF1634P (57% identity) | AGACC | HmuST1ORF6565P |
| 6565 | M | M.Hmu12714ORF1634P (82% identity) | AGACC | M.HmuST1ORF6565P |
| 6570 | 59 aa hypothetical protein | |||
| 2165 | pseudogene | |||
| 2170 | M | M.Hty6810ORF2920P (22% identity) | M.HmuST1ORF2170P | |
| 2175 | plasminogen-binding protein pgbA | |||
| 5570 | 336 aa hypothetical protein | |||
| 5575 | R | Hsp1616ORF1555P (73% identity) | HmuST1ORF5575P | |
| 5580 | 163 aa hypothetical protein | |||
| 3050 | 351 aa hypothetical protein | |||
| 3055 | M | M2.Hmu12714ORF246P (98% identity) | M1.HmuST1ORF3055P | |
| 3060 | pseudogene | |||
| 3065 | pseudogene | |||
| 3070 | M | M.Hmu12714ORF246P (100% identity) | M2.HmuST1ORF3055P | |
| 3075 | R | Hmu12714ORF246P (100% identity) | HmuST1ORF3055P | |
| 3080 | saccharopine dehydrogenase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7060 | antibiotic resistance protein | |||
| 7065 | R | Hma5501GmrSDP (57% identity) | HmuST1GmrSDP | |
| 7070 | DNA methylase | |||