Pantoea species PSNIH1 |
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Putative Pantoea species PSNIH1 RM systems
Ref: Conlan,S. et al. Sci Transl Med 6 (254), 254RA126 (2014)
REBASE ref # 19233
| Sequence length: | GenBank #: | |
| Chromosome: | 3,488,376 bp | CP009880 |
| plasmid pKPC-1c5: | 50,272 bp | CP009881 |
| plasmid pPSP-26e: | 87,166 bp | CP009882 |
| plasmid pPSP-a3e: | 331,227 bp | CP009883 |
REBASE acronym: PspNIH1
Org_num: 14191
All begin PSNIH1_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 720 | 66 aa hypothetical protein | |||
| 725 | M | M.Pag331ORF14550P (21% identity) | GATC | M.PspNIH1ORF725P |
| 730 | excisionase | |||
| 3215 | endonuclease | |||
| 3220 | M | M.PspVM4ORF248P (72% identity) | GATC | M.PspNIH1ORF3220P |
| 3225 | 75 aa hypothetical protein | |||
| 3425 | replication protein | |||
| 3430 | M | M.Pag4188ORF7270P (73% identity) | GATC | M.PspNIH1ORF3430P |
| 3435 | 120 aa hypothetical protein | |||
| 4610 | ribulose-phosphate 3-epimerase | |||
| 4615 | M | M.PeuXL123DamP (100% identity) | GATC | M.PspNIH1DamP |
| 4620 | DamX | |||
| 7890 | transcriptional regulator | |||
| 7895 | M | M.EcoZ1836ORF24740P (78% identity) | RGGNCCY | M.PspNIH1ORF7895P |
| 7900 | R | restriction endonuclease | RGGNCCY | PspNIH1ORF7895P |
| ??? | C | C.Eta2034ORFFP (60% identity) | C.PspNIH1ORF7895P | |
| 21195 | pseudogene | |||
| 15480 | 88 aa hypothetical protein | |||
| 15485 | V | V.PeuXL123DcmP (100% identity) | V.PspNIH1DcmP | |
| 15490 | M | M.PeuXL123DcmP (100% identity) | CCWGG | M.PspNIH1DcmP |
| 15495 | 84 aa hypothetical protein | |||
| plasmid pKPC-1c5 | ||||
| 18570 | transposase | |||
| 18575 | R | YpsR1ORFAP (99% identity) | CCWGG | PspNIH1ORF18580P |
| 18580 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.PspNIH1ORF18580P |
| 18585 | transposase, IS1 family protein | |||
| plasmid pPSP-26e | ||||
| 19145 | 130 aa hypothetical protein | |||
| 19150 | M | M2.AveDM21ORF19640P (63% identity) | M.PspNIH1ORF19150P | |
| 19155 | 269 aa hypothetical protein | |||
| plasmid pPSP-a3e | ||||
| 19545 | DNA-binding protein | |||
| ??? | M | M1.SenF8025ORFBP (100% identity) | M2.PspNIH1ORF19535P | |
| 19555 | 273 aa hypothetical protein | |||
| 20470 | nuclease | |||
| ??? | M | M.SenZC055ORF26240P (100% identity) | CCWGG | M.PspNIH1ORF20475P |
| 20480 | 439 aa hypothetical protein | |||
| 20850 | 102 aa hypothetical protein | |||
| 20855 | M | M.SenZC055ORF24890P (100% identity) | M.PspNIH1ORF20855P | |
| 20860 | 203 aa hypothetical protein | |||